Gene TK90_1195 details

Gene Information

• Locus tag: TK90_1195
• ID: 8806957
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thioalkalivibrio sp. K90mix
• Kingdom: Bacteria
• Replicon accession: NC_013889
• Strand: -
• Start bp: 1269633
• End bp: 1273106
• Gene Length: 3474 bp
• Protein Length: 1157 aa
• Translation table: 11
• GC content: 67%
• Product: transcription-repair coupling factor
• Protein accession: YP_003460440
• Protein GI: 289208374

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.865219
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 35
• Fosmid unclonability p-value: 0.466133
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCCGAAC AGCCGCGCAA CCCGCTAAAC CCCGGTCGCT TTCCCGGCGA CGGCTTCGAG 
ATCTGGTCGG GGCTCAATGC CTCGGCCGCT CCACTGGCAC TCGCACGCGC CGCCGCATCG 
GCGCAGTGGC CATTGCTGGT CGTCGTCGAG TCGAACGAGG CCGCGGACCG CTGGCAAGAG 
GAGTGGGAGT TTTTCGGTGC CGGGCTCGAC CTGCCGGTCA TGCGTCTCCC CGACTGGGAG 
ACCCTGCCGT TTGATGTCTT CTCGCCGCAC GAGGACATCA TCTCCGAACG ACTGCGTACG 
CTGTATCACC TCCCCTCGCT GGAGCGCGGG ATCATCCTGA TCCCGGTCTC CACGCTGATG 
CAGCGCCTGC CCCCGCGCGA CTGGCTGACC ACCCAGGGCC TCTCGCTGCG CAGTGGCCAG 
CGTCTGGACC GCATGCAGCT GCGGGAACGC CTGACCGAGG CCGGCTACAG CGCGGTCAAC 
CAGGTCATCA GCCGCGGCGA GTTTGCCGCA CGCGGGGAGA TCCTGGACCT GTTCCCGATG 
GGGGCCGAAC AACCGGTGCG CATCGAGTTT CTCGACGACG AGATCGACTC ACTGCGCCAT 
TTCGACCCGG AGACCCAGCG TTCCACGGAA AAGGTCGAGC GCGTCGAGAT CCTGCCCAGC 
CACGAGTTCC CGCTGAACGA GGGTTCCATC CGCGCGTTCC GCACCCGCTA CCGCGAGCAG 
TTCAGCGGCG ACCCCAGCCG CCACCCGATC TACCGGGACA TCAGCGAAGG CCTGGTGCCC 
CCGGGCATCG AGGCCTACCT GCCCCTGTTC TTCGAGGGCA TGGACAGCGT ATTCGACTAC 
GCCCCTCAGG CTCGGGTGGT GCAGGTCGGC AATATCGCCG ACGCCGCGCA GGAGTATGCG 
CGCGAGATCG CCGACCGCTT CGAGCAGCTG GGCCATCAGG TGGAACGCCC CCTGCTGCCG 
CCGGAGCGCC TCTATCTCGA CGAGTCGGCC CTGAACGAGG CCCTGCGTGC CCGCGCCGGC 
ATTGCCCTGG GCGGCGAGCC GCCGCAGCCG CTCCCGGCGG ACCGTGGCCG GACTGTGCCC 
TTCACCTGTG ATCCCCTCCC CGAACTGGGA ATGGAACACG GCAAGGATGC CCCTGCCGAA 
CGTCTGAAGC ACTTTGTCGG GGAACAGGAA CGAGTCCTGC TCACCGCCGA GTCCGCCGGA 
CGGCGCGAGG CCCTGCTGAC CCTGCTGCGC GAGCAGGATA TCCCGCATCA CGCGGTCGAT 
GACTGGGAGG CTTTCCTGGA GGGCGAGCCC GGCCTGAGCG TGACCGTCGG TGCGCTCAGC 
GAGGGGTTCC GGCTGCCGGA CGGGATCGTG CTCGTGCCGG AGTCCGCGAT CCTCGGCGAA 
CGCGCGCGGC AATCCCGCCG ACGCAGCCGC CCCACCCGCG ATGCCGACGC CGTCATCCAG 
AACCTCAGCG ACCTGACAAT CGGGGCCCCG GTCGTCCACG AAGAACAGGG CGTGGGCCGC 
TATCTGGGCC TCCAGACGCT GGATTTCAGT GGCCAGCCGT CAGAGTTCCT GACGCTGGAA 
TACGCCGACG GAGCCAAGCT CTATGTCCCG GTCTCCTCGC TGCACCTGAT CAGCCGCTAC 
ACCGGCGCCG ATGCGGAACA CGCCCCGCTC CACCGGCTGG GCAGCGAGCA GTGGAACCGC 
GCCCGCCGCA AGGCCGCCGA GAAGGCGCGC GATGTCGCCG CCGAGCTGCT GGAGGTCCAC 
GCTCGGCGCG CCGCCAAGCA GGGGACGGCG TTTGCGACCG AGACCCCCGA GTATCACGCC 
TTTGCGGCTG CCTTCCCGTT CGAGGAAACC GCCGATCAGC TCCAGGCAAT CGACGCGGTA 
CTGACCGACA TGGCTGACAC GCGGCCGATG GACCGCGTGA TCTGCGGCGA TGTCGGCTTC 
GGCAAGACCG AGGTCGCGAT GCGCGCCGCA TTCGTCGCCG TGCAGAACAA TCGCCAGGTG 
GCCGTGCTGG TCCCGACCAC CCTGCTCGCC CAGCAGCACC ATCAGAACTT CAGCGACCGC 
TTCGCCGACT GGCCCGTCCG CATCGAGTCC CTGTCGCGCT TTCGCAGTGC CAAGCAGCAG 
GCCGCCGTGC TGGAAGGGCT GAAGGAAGGC AAGGTCGATA TCGTGATCGG CACGCACAAG 
CTGCTGCAGT CGAACCTGGA CTTCTCCAAC CTCGGGCTCG TGATCGTGGA CGAGGAACAA 
CGCTTTGGCG TGCGCCACAA GGAGGCGCTG AAGAGACTGC GCGCCGAGGT CGACATGCTG 
ACCATGACCG CAACCCCGAT CCCGCGCACG CTGAACATGG CCCTGTCCGG GCTGCGCGAC 
CTCTCGGTGA TCACCACCCC GCCGCGCGAA CGCCTGGCAA TCAAGACCTT CGTCAACGAG 
TGGAACGACG CGATCATCCA GGAGGCCTGC CTGCGCGAGA TTCGCCGCGG TGGCCAGGTG 
TACTTCGTGC ACAACGAGGT CAACACCATC GAACGCATGG CGGAACAGAT TCGTGCGCTG 
CTGCCGGGCG CCCGCATCGG TATCGCCCAC GGCCAGATGC GCGAACGCGA ACTCGAACAG 
GTGATGCTCG ACTTCTACCA TCGGCGCTAC AACATCCTGG TCTGCTCCAC CATCATCGAG 
ACCGGCATCG ATGTACCCAC CGCAAATACG ATCGTGATGA ATCGCGCGGA CAAGCTGGGC 
CTCGCCCAGA TGCACCAGCT GCGCGGCCGC GTCGGGCGCT CCCACCACCG GGCCTACGCC 
TACCTGGTCA CGCCGCCGGA AAAAGCCATG TCGGCCGACG CGCGCAAGCG CCTGGAGGCG 
ATCGCCTCGC TGGAGGATCT CGGCGTGGGC TTCACGCTCG CCAGCCACGA CCTCGAGATC 
CGGGGCGCTG GCGAGTTGCT GGGTGACGAG CAAAGCGGCC AGATCCAGGA AGTCGGCTTC 
TCGATGTACA ACGACCTGCT CAACCGCGCG GTCAACGCCC TGCGCTCCGG CAAGATGCCC 
GAACTGGAGA CCCCGGAGAC CCCCGGAACG GAGGTCGAGC TGGGGCTGCC CGCCCTGCTC 
CCGGATGCCT ACGTGCCGGA TGTGCACACA CGCCTGATCC TCTACAAGCG CGTCAGCAGC 
GCCGAGAACA GCGATGCACT GCGCGAACTG GAGGTGGAAC TGGTGGATCG TTTCGGCCTG 
CTGCCCGATC CGGCGAAGGC CCTGTTCGAG GCGGCCCGCC TGCGGCTCAA GCTGACGCCG 
CTGGGGATCC GCAAACTGGA ACTGGGCCCG GCCGGCGGAC GCTTCGTTTT TGGACCCAAT 
CCCGAAATCG ATATCGCCGC CCTGATCGAA CTGGTGCAAT CCGACCCGAA TGCCTACAAA 
CTGGATGGCC AGAAGGCTTT CCGCTTTTAT GCCGAAATGG AGACTCTGGA GGCTCGCTCT 
CAGGCCGTCC AGCGTCTGAT CCATACCATC AGCCCGAAAC AACAGGCCGC CTGA 

 

Protein sequence

MSEQPRNPLN PGRFPGDGFE IWSGLNASAA PLALARAAAS AQWPLLVVVE SNEAADRWQE 
EWEFFGAGLD LPVMRLPDWE TLPFDVFSPH EDIISERLRT LYHLPSLERG IILIPVSTLM 
QRLPPRDWLT TQGLSLRSGQ RLDRMQLRER LTEAGYSAVN QVISRGEFAA RGEILDLFPM 
GAEQPVRIEF LDDEIDSLRH FDPETQRSTE KVERVEILPS HEFPLNEGSI RAFRTRYREQ 
FSGDPSRHPI YRDISEGLVP PGIEAYLPLF FEGMDSVFDY APQARVVQVG NIADAAQEYA 
REIADRFEQL GHQVERPLLP PERLYLDESA LNEALRARAG IALGGEPPQP LPADRGRTVP 
FTCDPLPELG MEHGKDAPAE RLKHFVGEQE RVLLTAESAG RREALLTLLR EQDIPHHAVD 
DWEAFLEGEP GLSVTVGALS EGFRLPDGIV LVPESAILGE RARQSRRRSR PTRDADAVIQ 
NLSDLTIGAP VVHEEQGVGR YLGLQTLDFS GQPSEFLTLE YADGAKLYVP VSSLHLISRY 
TGADAEHAPL HRLGSEQWNR ARRKAAEKAR DVAAELLEVH ARRAAKQGTA FATETPEYHA 
FAAAFPFEET ADQLQAIDAV LTDMADTRPM DRVICGDVGF GKTEVAMRAA FVAVQNNRQV 
AVLVPTTLLA QQHHQNFSDR FADWPVRIES LSRFRSAKQQ AAVLEGLKEG KVDIVIGTHK 
LLQSNLDFSN LGLVIVDEEQ RFGVRHKEAL KRLRAEVDML TMTATPIPRT LNMALSGLRD 
LSVITTPPRE RLAIKTFVNE WNDAIIQEAC LREIRRGGQV YFVHNEVNTI ERMAEQIRAL 
LPGARIGIAH GQMRERELEQ VMLDFYHRRY NILVCSTIIE TGIDVPTANT IVMNRADKLG 
LAQMHQLRGR VGRSHHRAYA YLVTPPEKAM SADARKRLEA IASLEDLGVG FTLASHDLEI 
RGAGELLGDE QSGQIQEVGF SMYNDLLNRA VNALRSGKMP ELETPETPGT EVELGLPALL 
PDAYVPDVHT RLILYKRVSS AENSDALREL EVELVDRFGL LPDPAKALFE AARLRLKLTP 
LGIRKLELGP AGGRFVFGPN PEIDIAALIE LVQSDPNAYK LDGQKAFRFY AEMETLEARS 
QAVQRLIHTI SPKQQAA