| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_1148 |
|---|
| Symbol | |
|---|
| ID | 8806909 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. K90mix |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013889 |
|---|
| Strand | + |
|---|
| Start bp | 1220190 |
|---|
| End bp | 1220747 |
|---|
| Gene Length | 558 bp |
|---|
| Protein Length | 185 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | |
|---|
| Product | RDD domain containing protein |
|---|
| Protein accession | YP_003460393 |
|---|
| Protein GI | 289208327 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00101829 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000000000000525817 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAATGTA AGGCATGCGG GCGGGACAAC CCGCCCGAGG CGCGCTATTG CAATGGCTGT
GGCGCGGATC TGGCGGGTGC GGGGGCATCG CCGCGCGCCC AGGGCGGCCC ACCGGAGGAT
CGCGCGGCCT TTGGGGGCTT CTGGCGGCGC GTGCTGGCCA CCCTGATCGA CATGGTGGTG
ATCGGGGTGC CGCAGATCGT GGCGCAGATG GTGATCAGCC CGGAGACGAT GGCCCCCAAG
GGTCCGGAAC CCGAGTTGAT GGCGGCCGAT ATTGCCTGGA TGCTGATCAA TATCCTGGTG
GCCTGGCTGT ACTGGGCCGG CATGCACAGC TCGCGCTACC AGGCAACGGT CGGGAAGATG
GCGGTGGGGT TGCGCGTGGT CGACTATCAT GGCGAGCGCA TCACCTTTAT GCGGGCCACG
GGGCGTTATC TCGCCGAGAT TCTCTCGGGC CTGCTGTTCG GGATCGGCTA TTTGATGGTG
GCCTTTACCC GCCGCCGCCA GGCGCTGCAT GACCTGATCG CGGAGACCTT CGTGGTGCGC
AAGGAGTGGC TGAACTAG
|
|---|
| Protein sequence | MECKACGRDN PPEARYCNGC GADLAGAGAS PRAQGGPPED RAAFGGFWRR VLATLIDMVV
IGVPQIVAQM VISPETMAPK GPEPELMAAD IAWMLINILV AWLYWAGMHS SRYQATVGKM
AVGLRVVDYH GERITFMRAT GRYLAEILSG LLFGIGYLMV AFTRRRQALH DLIAETFVVR
KEWLN
|
|---|
| |