Gene TK90_1132 details

Gene Information

• Locus tag: TK90_1132
• ID: 8806892
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thioalkalivibrio sp. K90mix
• Kingdom: Bacteria
• Replicon accession: NC_013889
• Strand: +
• Start bp: 1202385
• End bp: 1205909
• Gene Length: 3525 bp
• Protein Length: 1174 aa
• Translation table: 11
• GC content: 63%
• Product: hypothetical protein
• Protein accession: YP_003460378
• Protein GI: 289208312

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 19
• Fosmid unclonability p-value: 0.00035988
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGCATACAC TTAATCCAGA CTTGCGCAAA CAACTCGAAA TCACGGTGGT GGATGCGCGC 
GAACTGGCCG AAAAGGCCGC GCGCGCCGCG CTCGAAGAGC TGGGGGTGGG CGAGGGCACT 
CCGTATCCGC ATCTGACGGA GGGCCAACGC GACTTGCGGC GTCGTTTACG CCTGCATGGA 
CGACAGCTCG GCGATCCGTT GAATGGCGGC AAAGAGCAGA GCATGGAGCG CCTCGTCGAG 
GAGGTCGCCT ATGAGCACTG GCACCGCATG CTGTTTGCGC GCTTCTTGGC GGAGAACGAG 
CTGCTGATGT ACCCGGACCC GGAGGGTGCA GTGCCGGTGA GCCTGCAGGA CTGCGAGGAC 
CTCGCCGCCG ACGAGGGCGC CGCCAACGGC TGGGAGCTGG CCGCGCGCTA TGCCGCGCAG 
ATGCTGCCGC AGATCTTCCG CGTGGATTCG CCGGTCTTCG AGCTGAAGCT GCCCACCAAT 
TTCCAGCAGC CGCTGGAACG CCTGCTGGCG GAGCTGCCGG CAGAGATCTT CACGGCCTCG 
GATGCCCTCG GCTGGGTCTA TCAGTTCTGG CAGACCAACA ACAAGGAGCG CATCAACCGC 
TCGGAGGTCA AGATCGGCGC GCGCGAGTTG CCGGCGGTCA CGCAACTCTT CACCGAACCG 
TACATGGTCA GCTTCCTGCT GGACAACGCC CTTGGTGCCT GGTGGGCGGC GCGGCGCTTG 
ACGGAAGACG ACCTGCGTAA CGCCGAAAGC GAGGAAGCGC TGCGCCAGAA GGCTGCCATC 
CCCGGCGTGC CGCTGCAGTA CCTGCGCTTT GTGCGCGAGG AGACCTACGC CGTGGACGGG 
CAGGCCGGCG ATGATCAGCC AGAAGGTGGT GCCGGGCAGG GCGCATGGAC GCCGGCGGCC 
GGCACCTTCG TGCAATGGCC TCAAAACATT GCGGACATGA AGATCATGGA CCCCTGCTGT 
GGCTCGGGGC ACTTCCTGGT GGCGGTGCTG CTCATGCTCG TGCCCATGCG CCAGGAACTG 
GAAGGGCTCG ACCCGCAGCA GGCTGTGGAC GCCGTGCTGC GCGACAACCT CCACGGTCTG 
GAGCTGGACC AGCGCTGCGT GGAGCTGGCC GCCTTCGCCC TGGCGCTCAC CGCCTGGCGC 
TACCCCGGGA CGGGCGGCTA CCGCAAGCTG CCGGAAATCC AGGTGGCCTG TTCCGGCCTC 
TCTGTCAGCG TGGCCAAGGA CGAATGGAAG CAGCTCGGAC TGGGCCGCAA GAACCTCTCC 
ATCGCGCTCG ACTGGATGCA CGACGCCTTT CGCGACGCGC CGGTGCTGGG CAGCCTGCTG 
AATCCGGCCA AGACCGACGC CGCCAAGGTC GTGCAGTGGT CAGAGCTGTC CAGCGTGCTG 
GACGGGGCGC TCAGCCAGGA ACGCACCGAC GCCCAGCAGG AAGCCGCCGT GGTCGCCCAG 
GGCCTGGCCA AGGCCGCGAC GCTGCTTGCC GGCCAGTACA CCTGGGTGGT CACCAACGTG 
CCCTATCTCT CGCGCGGTAA GCAGTCCGAG CGCCTGCGCG ATTTCTGCGA GAAGCACTAT 
CCGGCCGCCA AAAACGACCT GGCCACCGTT TTCCTCGACC GCTGCCTGGA GCTATGCGCC 
GAGGGCGGCA GCAGCAGCGT CGTGCTGCCG CAGAACTGGC TGTTCCTCAG CAGCTACAAG 
AAGTTCCGGG AAAAGCTGCT CAAGCAGGAA GCCTGGAACC TGATTGCTCG CCTTGGCGAG 
CATGGTTTCG ATTCGCCTCA GGCTGCAGGG GCCTTTGTTG CCATGCTCAC CCTGACCCGT 
GGCAACGCCA CCAGCCAGCA CGGCGCGCTC TTTTCCGGCG AGACGGTCAC CCAGCGCATT 
CGCGGCGTCG ATGTCTCTGA ACCCAGAACC GCCGCCGACA AGGCTGCCGC GCTGCTCGGC 
GCTGAGGTCA AGAGCGTGGA TCAGGCCGGG CAGTTGGAGA ATCCGGATGC GCGGGTTTCC 
TTGGAAGATC TGGAGACCGG CAGCATCCTT AGCGATTCGG TGAACAGTTT TCTCGGGCTT 
GGCACAGGCG GATTTGAGCA ATTTGGCCGC TCGTTCTGGG AGTTTGACCG GAGGCCATCA 
GACTGGGCTT TGTTGCAGAC AGCGCCACAG AATCGCGCGG ACTTTGATGG TCTGTCCTCA 
TTGGTCGCTT GGGAAAAGAA CTCCAATCGC GTTAAGGGGA TGGATCGGCT GTACCGAGAG 
CGAATTCACA ATCAAGACCA AAGTGGGCAG CAAGCTTGGA ATAAATCTGG CATTGGGGTC 
GCGCTTATGC GTGGTCTCCG ATGTTCGCTT TATACTGGAG CAAAACATGA CAAGTCGATG 
GCAGCCTTAA TTCCGACCGA CGAATCGATT ATCGCGGCTG TCTACGCGTA CTGCAAGTCA 
ACGGATTATT ACGAGCGAGT CAGGGAAATT GATCAGAATG TGATCGTTGC GAATGGAACC 
CTAGTCAAAG TCCCCTTCGA TCTCGAACGC TGGACTCAAG TCGCCGCCGA GCAATATCCC 
CACGGCCTAC CAAAGCCCTA CACAGACGAC CCCACCCAGT GGATATTCCA CGGCCACCCC 
AGCGGTTCGG TCGTCTGGGA TGAAGACAGC AAACGGACGG CCCACGGTCC ACTCCGTACC 
GACGATACCG TTCTGCAGGT CGCAGTTGCC CGTCTGCTCG GTTACCGCTG GCCTGCGGAG 
CTGGATCCGG AGATGGAGCT GGCCGCCGAG CAGCGCGAGT GGGTGGAGCG CAGTGAAGCG 
CTGCTGCCGC ATGTCGACCG CGATGGGATC GTCTGCATCC CGCCGGTGCG GGGGGAGGGG 
GCCGCTGAGG ACCGGTTGCT TGGTCTGCTG GCGGCCGCCT ATGGCGATGA GTGGTCCGGC 
CAGGTACAGG CCAACCTACT TGCGAGCGTC GGCCATGCTG GAAAGACCCT GGAGAGCTGG 
TTGCGGGATA AGTTCTTCGC CCAGCACTGT AAGCTCTTCC AGAATCGGCC CTTCATCTGG 
CAGGTATGGG ACGGCCTGCG CGACGGCTTC TCGGCCCTGC TGAACTACCA CCGGCTGGAC 
TACAAGAACC TGGAGACGCT GATCTACACC TACCTCGGCG ACTGGATCAA GAGGCAGAAG 
CAGGACATCA GCAGCGGCGT CGACGGCGCC CAGGAAAGGC TCGCCGCCGC AGAGGCCCTC 
AAGGAGCGCC TGCTGCTGAT CCTGGAAGGT GAGAAGCCCC ACGACATTTT CGTGCGCTGG 
AAGCCGCTGG CCGAGCAGCC CATCGGTTGG AACCCCGATC TGAACGACGG CGTGCGCCTC 
AACATCCGGC CCTTCGTTTA TGTACCCGAC ATCAAGGTGA AGGATGCGGG CATTCTCCGC 
GATCGAGTGA CAACTCGTGA TTTGAAGACG AAGCAGCTGA AATTCTGGAA GAAGGATCGC 
GGCAAGGACG TCGAGTCCGC CCCCTGGTTC GACACCTTTG GGGGCGAGCG GATCAACGAT 
CACCATCTGA CCCTGGCCGA GAAGCGGGCG GCGCGTGGTG TGTAA 

 

Protein sequence

MHTLNPDLRK QLEITVVDAR ELAEKAARAA LEELGVGEGT PYPHLTEGQR DLRRRLRLHG 
RQLGDPLNGG KEQSMERLVE EVAYEHWHRM LFARFLAENE LLMYPDPEGA VPVSLQDCED 
LAADEGAANG WELAARYAAQ MLPQIFRVDS PVFELKLPTN FQQPLERLLA ELPAEIFTAS 
DALGWVYQFW QTNNKERINR SEVKIGAREL PAVTQLFTEP YMVSFLLDNA LGAWWAARRL 
TEDDLRNAES EEALRQKAAI PGVPLQYLRF VREETYAVDG QAGDDQPEGG AGQGAWTPAA 
GTFVQWPQNI ADMKIMDPCC GSGHFLVAVL LMLVPMRQEL EGLDPQQAVD AVLRDNLHGL 
ELDQRCVELA AFALALTAWR YPGTGGYRKL PEIQVACSGL SVSVAKDEWK QLGLGRKNLS 
IALDWMHDAF RDAPVLGSLL NPAKTDAAKV VQWSELSSVL DGALSQERTD AQQEAAVVAQ 
GLAKAATLLA GQYTWVVTNV PYLSRGKQSE RLRDFCEKHY PAAKNDLATV FLDRCLELCA 
EGGSSSVVLP QNWLFLSSYK KFREKLLKQE AWNLIARLGE HGFDSPQAAG AFVAMLTLTR 
GNATSQHGAL FSGETVTQRI RGVDVSEPRT AADKAAALLG AEVKSVDQAG QLENPDARVS 
LEDLETGSIL SDSVNSFLGL GTGGFEQFGR SFWEFDRRPS DWALLQTAPQ NRADFDGLSS 
LVAWEKNSNR VKGMDRLYRE RIHNQDQSGQ QAWNKSGIGV ALMRGLRCSL YTGAKHDKSM 
AALIPTDESI IAAVYAYCKS TDYYERVREI DQNVIVANGT LVKVPFDLER WTQVAAEQYP 
HGLPKPYTDD PTQWIFHGHP SGSVVWDEDS KRTAHGPLRT DDTVLQVAVA RLLGYRWPAE 
LDPEMELAAE QREWVERSEA LLPHVDRDGI VCIPPVRGEG AAEDRLLGLL AAAYGDEWSG 
QVQANLLASV GHAGKTLESW LRDKFFAQHC KLFQNRPFIW QVWDGLRDGF SALLNYHRLD 
YKNLETLIYT YLGDWIKRQK QDISSGVDGA QERLAAAEAL KERLLLILEG EKPHDIFVRW 
KPLAEQPIGW NPDLNDGVRL NIRPFVYVPD IKVKDAGILR DRVTTRDLKT KQLKFWKKDR 
GKDVESAPWF DTFGGERIND HHLTLAEKRA ARGV