Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TK90_1027 |
Symbol | |
ID | 8806784 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thioalkalivibrio sp. K90mix |
Kingdom | Bacteria |
Replicon accession | NC_013889 |
Strand | - |
Start bp | 1087760 |
End bp | 1090288 |
Gene Length | 2529 bp |
Protein Length | 842 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_003460278 |
Protein GI | 289208212 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0664928 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGCCC TTCCCCGCTC CCCGGCTCTA CCCCATATGC CCCTGATGTG GCTGACATTG CTGGCACTGT TCATGCTGCC CGCGCTCCTC TGGATGGTCG GCATCCCCGT CCCGCCTCTG GTCCCGCTGG AGCACATGAC CGCGTTCCAC ACGGCCACCG AACTGTTCGC GGTGGTCGTG GCAATCGGCG TGTTCGCGGT CGCCTATCAC GTGCGCGACC GCCGTCGGCT GATGGCCACT CTGGTCCTCG CCACAGCGTT TCTGGCGGTT GGCCTGCTCG ATTTCCTGCA CCTGATGACC TATCCGCAGA TGCCGGATTT CATCACTCCC AACTCCTCGC AGCAGACGAT CTTTTTCTGG CTGGCCGCGC GGCTCGTCGG CGCGCTGGCT CTTCTGCTCT ACGTAGCACT TCCCCTGGTC CCGAGAAGCC AGGGACCCGC TCCCAGAGGC ATGCTGGCGG GTGCGTTGGT ACTTGTTGCG TTGCTTGCCT GGGTAGGGCT GTGGCATGAG CAGCGCATCC CGGCACTGTT CATCCCGGGC GAGGGACTGA CGCCGTTCAA GATCGCGCTG GAGGGCGTGG TGGTGGCACT GCATGCGGCC ACCCTGGTGA TCCTGCTACT GCGCCCGCAG CTCATGCAGC GCCCGGGCAT GCCGCTGGTG GCCGCCGCGC TGATGATCCT GATGGCCAGC GAGGTGTTCT TTACCCTGTA CGACAACCTG TCCGACGGCT TCTTCGTACT CGGCCATATC TACAAGGTGG CGGCCTATGC GCTGATTTAC TGGGCCGTAT TCATCGAAAG CGTGCGAGCG CCCATGGCCC AGCTGAGGGC TGCCCACCGG GATATCGAGC TGCGCCAGCA GCGCTACGAG CAACTGATCG ACACGGCGCC GGACGGGGTG CTGGTGACCG ACGGCGGCGG CACCATCCTG ATGGCGAATC GCAACCTCGA ACGGCTGTTC GGGTACCCGC GACGGCATCT GATTGGCCAG CCCGTGGAGA ACCTGATCCC CGAGCGCCTG CGCGAACACC ACCGATCGGT CCGCTTGCAG CAGGGCGACA ACATCTCGGA ACGCACCATG GGCCAAATAC CCGACCTGCG GGGACGTCGG CTGGACGGTA CCGAGTTTCC AGTCGACATC AGCCTGAATG CCTTCGAGGA CCAGGGCGGG CGGCGCATCA CCGCCTTTAT CCGTGACATT ACGGACCGCC AGCGCCGCGA GGCCCGTATC CAGCACCAGG CGACTCATGA CAGCCTGACC GGCCTGCCCA ACCGCTGGCT CCTGCACGAT CGGCTTGCCC AGAGTATTGC CCATGCCAGC CGGCACGAAC ACCGCATTGC GGTGATGCTG CTCGATCTCG ACCACTTCAA GATGATCAAC GACACCTTCG GGCACCACGA GGGTGACGAA CTGCTGCGCG AAGTGGCGCA GCGCCTGAAG GACGCAGCGG GCACCGACGC CACGATCGGG CGTTTTGGCG GCGACGAGTT CATGATCCTG CTCCCCGAGA TTACGGATGA ACTGCAGGTC GGAGAGCGCG GCCAGGAGAT CCTGGCGCAG TTCGACCGGC CGTTTCACAC CGGCCCCACG CGCCAATTCA GCTCCAGTGC CAGTCTCGGG ATCGCGCTGT TCCCGCAGGA TGCGCGGGAC GCGAACACCC TGGTGCGCTA TGCCGACATG GCGATGTACG AAGCGAAGCG GTCCGGGCGC AACACCTACG CATTCTATTC CGAACACCTG GATGCCCAGG TACGTGCGGA ACAGCAGCTC CAGGAGCGAC TGAAACACGC ACTGGAGCAC GACCAGCTGG CACTCCACTT CCAGCCGTTG ATCGATGCCC ACTCCGGGGC CGTTACCGCC GCCGAGGCCC TGCTCCGCTG GAACGATCCG GAACTGGGTG CCGTACCACC ATCGCGCTTT ATCCCCAGCG CCGAGGCGAA CGGGTTGATT CTGCCGCTCG GCGACTGGGT GATCCGTCGC GCCTGCCAGC AACTGGCCGA CTGGGCACAA CTGGATGTCG ACACCTCCAT TTGCATCAAT GTCTCGGCGC TTCAGTTCCG ACAGCCGGAT CTCGTCTCCC GACTCGCTGC GGCCCTGAAG GAGGCCGGCG CTTCGCCCGA ACATCTAGAG ATCGAGGTGA CCGAGACCGT GGCCATGGCC GATGTCGCCC TGACGCGCGA GCACCTCTCC GGGCTCAAGG CCCTCGGTGT GCGCGTATCG CTGGATGATT TCGGCACCGG GTATTCTTCG CTCGCCTATC TGAAGTCGTT GCCGATCGAC AAGATCAAGA TTGACCGCTC GTTCATCGCG GGGATCGGCC ACGACCGCGA CGCCGAGATG ATTCTGCGTT CGGTGATGGG CCTCGGTCAC AGCCTGCATT TGAAGCTGGT GGCAGAAGGC GTCGAGACAG CCGAGCAGCT CGCCTTTCTG CGCAGAGAAG GCTGCGACCT GTACCAGGGC TGGTTCTATT CGCCCGCGCT TTCGGTGGAG GAGTTCCGTG CCACGGTCCA CTCGCAACTG GATGCCTGA
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Protein sequence | MNALPRSPAL PHMPLMWLTL LALFMLPALL WMVGIPVPPL VPLEHMTAFH TATELFAVVV AIGVFAVAYH VRDRRRLMAT LVLATAFLAV GLLDFLHLMT YPQMPDFITP NSSQQTIFFW LAARLVGALA LLLYVALPLV PRSQGPAPRG MLAGALVLVA LLAWVGLWHE QRIPALFIPG EGLTPFKIAL EGVVVALHAA TLVILLLRPQ LMQRPGMPLV AAALMILMAS EVFFTLYDNL SDGFFVLGHI YKVAAYALIY WAVFIESVRA PMAQLRAAHR DIELRQQRYE QLIDTAPDGV LVTDGGGTIL MANRNLERLF GYPRRHLIGQ PVENLIPERL REHHRSVRLQ QGDNISERTM GQIPDLRGRR LDGTEFPVDI SLNAFEDQGG RRITAFIRDI TDRQRREARI QHQATHDSLT GLPNRWLLHD RLAQSIAHAS RHEHRIAVML LDLDHFKMIN DTFGHHEGDE LLREVAQRLK DAAGTDATIG RFGGDEFMIL LPEITDELQV GERGQEILAQ FDRPFHTGPT RQFSSSASLG IALFPQDARD ANTLVRYADM AMYEAKRSGR NTYAFYSEHL DAQVRAEQQL QERLKHALEH DQLALHFQPL IDAHSGAVTA AEALLRWNDP ELGAVPPSRF IPSAEANGLI LPLGDWVIRR ACQQLADWAQ LDVDTSICIN VSALQFRQPD LVSRLAAALK EAGASPEHLE IEVTETVAMA DVALTREHLS GLKALGVRVS LDDFGTGYSS LAYLKSLPID KIKIDRSFIA GIGHDRDAEM ILRSVMGLGH SLHLKLVAEG VETAEQLAFL RREGCDLYQG WFYSPALSVE EFRATVHSQL DA
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