| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_0820 |
|---|
| Symbol | |
|---|
| ID | 8806575 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. K90mix |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013889 |
|---|
| Strand | - |
|---|
| Start bp | 876956 |
|---|
| End bp | 878365 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | |
|---|
| Product | Deoxyribodipyrimidine photo-lyase |
|---|
| Protein accession | YP_003460071 |
|---|
| Protein GI | 289208005 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.627339 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGGAC CCACCCTCGT CTGGCTGCGC CAGGACCTGC GCCTGGCCGA CCAGCCCGCG
CTGCATGCCG CCGTCGAGCG CGGCGGGGCC GTGATCCCGG TCTTCATTCA TGCCCCGGAC
GAGGACCTGC AGTGGCCCCC CGGGGCCGCC TCCAACTGGT GGCTGCACCA CAGCCTGCAG
TCGCTCAACG AGGCGCTGAA CAAGGCCGGC AGCCCTCTGG TGGTGCGCGC CGGCCCGAGC
CTCGACACCC TGCGCGAGCT GGTCGCCGAG ACCGGGGCCA CGGCCGTGTA CTGGAACCGC
GTCTACGAAC CCGCTCGCGT CCTGCGTGAC CAGGGCATCA AGGCCGGGCT GCGCGCCGAC
GGACTGGATG TTCGCAGCTT CAACGCGGCC TTGTTGATCG AGCCCTGGGA TGTCGAGACC
GGCCAGGGCG GCCCGTACAG GGTCTTCACC CCGTTCTGGC GCGCCTGCCT GCAGCGCGGG
ATCGAACAGA ACCCGCTCCC CGCCCCTTCC CGCCTGCCGG CGCCCGGGAA ACCACCGCGT
TCCTTGATGC TCGACGACCT GGAACTGTTG CCACCAATCG ACTGGGCCGG CGGCCTGCGC
GCCACCTGGA CGCCCGGCGA GCGTGGCGCC CGGGACCGCC TGGAGCGGTT CCTCGAGCAG
GCGATCGCAG GCTATGCCGA CAGCCGCGAC CGTCCCGACC AGGACGGCAC CTCGCGGCTG
TCACCGCATC TGCATTTTGG CGAGGTCTCG CCGCGCCAGG TGCTGCGCGC ACTGCGCGAT
GCCGGCGTCA GCCTGGATCA CAAGGGACCC GAGTCCTTCG TGCGTGAACT CGGCTGGCGC
GATTTTGCGC ACCATGTGCT CTATCACTTC CCGCACACGA CGGAACAGCC CCTGAACCCG
CGCTTCGAAG ATTTCCCCTG GCGCGAATCG GAGGCCGACC TCGCCGCGTG GCAGCAGGGC
CGCACCGGCA TCCCGATCGT GGACGCAGCG ATGCGCCAGC TGTGGGAAAC CGGCTGGATG
CACAACCGCC TGCGCATGGT CGTGGGCTCG TTTCTGACCA AGAACCTGCG CCTGCACTGG
GGACACGGCG CCCGATGGTT CTGGGACACC CTGGTCGACG CCGATCTCGC CTCCAACACC
CTGGGCTGGC AGTGGGCCGG CGGTTGCGGC GCCGACGCGG CACCCTATTT CCGGATCTTC
AACCCGCAAC GCCAGGGGGA ACAATACGAC CCGGACGGGC GATTCGTGCG AAGCTTTCTG
CCGGTGCTCA AGAAGACCGA AACACGGTAT ATTCACGCCC CGGGCGCCGG CGGCACCCCG
GGCTATCCCG ACCCGATCGT CGATCTGAAA GCCAGCCGCC AGGCCGCACT CGAGGCCTTC
GAGGCCATCA AGAAGACTTC ACCCAATTAA
|
|---|
| Protein sequence | MPGPTLVWLR QDLRLADQPA LHAAVERGGA VIPVFIHAPD EDLQWPPGAA SNWWLHHSLQ
SLNEALNKAG SPLVVRAGPS LDTLRELVAE TGATAVYWNR VYEPARVLRD QGIKAGLRAD
GLDVRSFNAA LLIEPWDVET GQGGPYRVFT PFWRACLQRG IEQNPLPAPS RLPAPGKPPR
SLMLDDLELL PPIDWAGGLR ATWTPGERGA RDRLERFLEQ AIAGYADSRD RPDQDGTSRL
SPHLHFGEVS PRQVLRALRD AGVSLDHKGP ESFVRELGWR DFAHHVLYHF PHTTEQPLNP
RFEDFPWRES EADLAAWQQG RTGIPIVDAA MRQLWETGWM HNRLRMVVGS FLTKNLRLHW
GHGARWFWDT LVDADLASNT LGWQWAGGCG ADAAPYFRIF NPQRQGEQYD PDGRFVRSFL
PVLKKTETRY IHAPGAGGTP GYPDPIVDLK ASRQAALEAF EAIKKTSPN
|
|---|
| |