| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_0668 |
|---|
| Symbol | |
|---|
| ID | 8806417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. K90mix |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013889 |
|---|
| Strand | + |
|---|
| Start bp | 708754 |
|---|
| End bp | 711234 |
|---|
| Gene Length | 2481 bp |
|---|
| Protein Length | 826 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | |
|---|
| Product | nitrite reductase (NAD(P)H), large subunit |
|---|
| Protein accession | YP_003459919 |
|---|
| Protein GI | 289207853 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.483755 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.0494123 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATACCG CGAACGACAA GCCGCGGCTG GTCCTGATCG GCAACGGCAT GGCCGGCATG
CGCACGGTCG AGGAGCTCTT GAAGCTCACG CCGGACATGT ACGACATCAC CGTGTTCGGC
GCCGAGCCCT GGGGCAACTA CAACCGCATC ATGCTCTCGC CGGTGCTGGC CTCGGAGAAG
ACCGTCGACG AGATCATGCT GAACGACGAT GCCTGGTATG CCGAACGCGG CATCACCCTG
CACAAGGGCC GACGCATCGA GCGGATCGAC CGCGTGAACC GGCGGGTGAT CGCCGAGGAC
GGCACCGAGG CGCCCTATGA CCGCCTGCTG CTGGCGACCG GCTCCGACCC GGTGATGATC
CCGGTGCCGG GGCACGAACT GGAGGGCGTG GTTGCCTTCC GCGACATCCA CGACGTGGAC
GCGATGCTCG CGGCCAGCCG CGCACACCAG CATGCGGTGG TGATCGGCGG CGGCCTGCTG
GGCCTGGAGG CTGCCAACGG CCTGATGCGC CAGGGCATGG AGGTCACCGT GGTGCACCTG
ATGGATCACC TGATGGAGCG CCAGCTGGAT GCCGAGGCCG CCGGGATGCT GCGCGGCTCG
CTGGAGGAGC GCGGCATGCG TTTTCGCATG GCGCACCAGA CCGAGGCGAT CCTGGGCGAG
GACCGCGTCA CCGGCGTGCG CTTCACCGAC GGCAGCGAGG TCGAGGCGGA TCTGGTGGTG
ATGGCGGTCG GCATCCGTCC GAACACCGCG CTGGCCGAGT CCGCCGGGCT GCACTGCGAG
CGCGGCGTGG TGGTGAACGA CACGATGCAG ACCTATGACC CGTCGATCTA CGCGGTCGGC
GAGTGTGTGC AGCACCGCGG CGCCACCTAC GGCCTGGTCG CGCCCCTGTG GGAGCAGGCG
AAGGTCTGCG CCAACCACCT GGCCGAGTAC GGCATTGGGC GCTACGAGGG CTCGATGACC
TCCACCAAGC TGAAGGTGAC CGGGATCGAC CTGTTCTCCG CCGGCGACTT CACCGGCGAC
GAGACCACCG AGGACCTGGT GTTCAAGGAT GCCGCGCGCG GCGTCTACAA GCGCCTGGTG
CTGAAGGACA ACCGCATCCA GGGGGCCGTG CTGTACGGCG ATACCCTGGA CGGCTCCTGG
TACTTCCAGC TGATGCGGGA CGGAACGCCA GTGGCCGACA TCCGCGAGAA CCTGCTGTTC
GGCCAGGCGC ATATCGGCGA CTCCGGTCAT GGCGACGAGG CCTCGCGCGT GGCGGCGATG
CCGGACAACG CCGAGATCTG CGGCTGCAAT GGCGTGTGCA AGGGCGAGAT CGTCCAGGCG
ATCAGCGAGC ACAAGCTGTT CACGCTGGAG GACGTGCGTG CCCACACCAA GGCCTCGAAC
TCCTGCGGTT CCTGCACCGG ACTGGTCGAG TCGCTGCTGG CGACCACGCT GGGCGGTGAC
TACTCCGATG CCCCGGCGAA AAAGCCCGTC TGCGCCTGCA CCGATCACAG TCACGACGAG
GTTCGCGCGG CGATCACCCG CGACGGCCTG AAGACCATGG ACGCGGTGTT CGAGGCCCTC
GACTGGAAGA CCCCGAACGG CTGCCATGTC TGCCGTCCGG CGCTCAACTA CTACCTGCTG
GCGGCCTGGC CGAAGGACTA CCAGGACGAC GCCCAGTCGC GCTTCATCAA CGAGCGCGCC
CACGGCAACA TCCAGAAGGA CGGTACCTAT TCCGTCGTGC CGCGCATCTG GGGCGGGGTG
ACCACCCCGG CCGAGCTGCG CGCGATCGCC GAGGTGGCCG AGCGCTACCA GGTGCCCACG
GTCAAGTTCA CCGGCGGCCA GCGCATCGAC CTGCTGGGGG TGAAGAAGGC CGACCTGCCG
GCGATGTGGC GCGATCTCGG CGACGCCGGG TTTGTCTCCG GCCATGCCTA CGGCAAGGCC
CTGCGTACGG TGAAGACCTG TGTCGGCTCC GAGTGGTGCC GCTTTGGCAC CCAGGACTCG
ACCGGACTCG GCATCCAGCT GGAACGGATG AGCTGGGGCT CCTGGACCCC GCACAAGTTC
AAGATGGCGG TCTCTGGCTG TCCGCGTAAC TGCGCCGAGG CCACGATCAA GGACCTGGGC
GTGGTCTGCG TGGACTCGGG CTACGAGCTG CACGTGGGCG GCAACGGCGG GGTGAAGGTG
CGCGCCACCG ACTTCCTCTG CAAGGTGGAG ACCGAGGCCG AGGTGCTGGA ATATGCCGGG
GCCTTCATGC AGTTCTACCG CGAAGACGCG CGCTACCTGG AACGCACCGC CCCGTGGATC
GAGCGCGTCG GGCTGACCCG GGTGAAGGAA CGCCTGGTGG ACGACGCCGA GAACCGCGCG
GCACTGTACG CCCGCTTCCT GGAGTCGCAG GAGGTGGCGC AGGTGGACCC CTGGGCCGAG
CGGGCCGCCG GGCATGCGGC GCACGAGTTC ATTCCGATCA CGCCGGTGGA CGCGCCCCCG
CGCCAGGGGG TGTCGGCATG A
|
|---|
| Protein sequence | MDTANDKPRL VLIGNGMAGM RTVEELLKLT PDMYDITVFG AEPWGNYNRI MLSPVLASEK
TVDEIMLNDD AWYAERGITL HKGRRIERID RVNRRVIAED GTEAPYDRLL LATGSDPVMI
PVPGHELEGV VAFRDIHDVD AMLAASRAHQ HAVVIGGGLL GLEAANGLMR QGMEVTVVHL
MDHLMERQLD AEAAGMLRGS LEERGMRFRM AHQTEAILGE DRVTGVRFTD GSEVEADLVV
MAVGIRPNTA LAESAGLHCE RGVVVNDTMQ TYDPSIYAVG ECVQHRGATY GLVAPLWEQA
KVCANHLAEY GIGRYEGSMT STKLKVTGID LFSAGDFTGD ETTEDLVFKD AARGVYKRLV
LKDNRIQGAV LYGDTLDGSW YFQLMRDGTP VADIRENLLF GQAHIGDSGH GDEASRVAAM
PDNAEICGCN GVCKGEIVQA ISEHKLFTLE DVRAHTKASN SCGSCTGLVE SLLATTLGGD
YSDAPAKKPV CACTDHSHDE VRAAITRDGL KTMDAVFEAL DWKTPNGCHV CRPALNYYLL
AAWPKDYQDD AQSRFINERA HGNIQKDGTY SVVPRIWGGV TTPAELRAIA EVAERYQVPT
VKFTGGQRID LLGVKKADLP AMWRDLGDAG FVSGHAYGKA LRTVKTCVGS EWCRFGTQDS
TGLGIQLERM SWGSWTPHKF KMAVSGCPRN CAEATIKDLG VVCVDSGYEL HVGGNGGVKV
RATDFLCKVE TEAEVLEYAG AFMQFYREDA RYLERTAPWI ERVGLTRVKE RLVDDAENRA
ALYARFLESQ EVAQVDPWAE RAAGHAAHEF IPITPVDAPP RQGVSA
|
|---|
| |