| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_0622 |
|---|
| Symbol | |
|---|
| ID | 8806371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. K90mix |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013889 |
|---|
| Strand | - |
|---|
| Start bp | 663118 |
|---|
| End bp | 665232 |
|---|
| Gene Length | 2115 bp |
|---|
| Protein Length | 704 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | |
|---|
| Product | protein of unknown function DUF940 membrane lipoprotein putative |
|---|
| Protein accession | YP_003459873 |
|---|
| Protein GI | 289207807 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.944587 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.172231 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCTA CACCTTTGCG CATGCGCCGC CGCAGCCTGG TGGTCGCCGT GCTCCTCGGC
CTGGGCCTGC CCACGGCACA GGCCGAGGAG TTCGGACTCG GCCAGGGCCA GCGGGATACC
GGCGGTATTG GTCTGATGCA GACCCCCACG GCCCGCACCG GTGATGCCGG TCACTTCGCC
GCGGGCTGGA ATCGCACCTA CCCCTACCGC CGCTGGAGCG TCTTCGTACA GCCGCTCGAC
TGGATGGAGC TCGGCTTTCG CTATGTACAG GTCGAGAACC GGCCCTACCT GGCCGCCGGC
GATGACGACC GTTACAACAT CGACAAAGGC GCGGACATCA AACTCCGTCT GGTCGAGGAG
AGCCGCTATA TCCCGGAAGT GGCCGTCGGG TTCCAGGACC TGGGCGGCAC TACCCTGTTC
GGGGGCGAGT ATCTGGTTGC CAGCAAGCGC TGGAACAACT TCGACTTTTC CCTGGGGCTG
GGCTGGGGTT ATCTCGGCAA CCATGGCGAT ATCGAATCGC CGCTTGGCTG GATTGACGAC
AGTTTTGACG AACGGCCACG TTCCGCCGGC GGCGGTCAGG GCGGCGAAAT CGCGACGCAC
CAGATGTTTC GTGGCCCGGC GGCCCTGTTC GGTGGGGTCG AGTACCAGAC GCCCTGGGAC
CGCCTGCTGC TGCAGGTCGA GTACGAGGGC AACACCTATC AGCACGAGCC GCAGGACAAC
GCCCAGGAAC AGGATTCCCG CTTCAATTTC GGGGCGCGCC TGAAACTGAC CAACAGCATC
GAACTGCATA CCGGCTGGCA GCGCGGCAAT ACCGCGATGG TGGGCCTGCA TTTCACGACC
AACCTGGCAC GGCTCTCGCA GCCCAAGGCC GACGACCCGC CTCCGGTAGA CCCCGCCCAT
GTAGAGCGCC GCGACTGGGA TGCGGTGGCC ACGGACCTCA ACACCAATGC CGGGATCTAC
GTGACCGAGA TCCGCCAGGT CGGCGACACC ATCGAGGTCA CGGGCGAACC GGCTCGCTAC
CGCAACCTGA AGCAGTCCGA AGGGCGGGCC AACCGTCTGC TCGAGGCACA GGCCGATGCC
GGCATCCACA CCTTCCAGTA CCGCTGGCAG ACACTGGGCC TCGATCTGCG TGAGAGCCTG
CATGATCGCG AGGCCTTCGG CCGCGCCCTG GCCTCCGCGG ATCACGAGAC CGACTACCGG
CACAGTGTGC GGGTGCGCGA TATCGAACCC ACGACCAACC ATGATCGTGG CGAGGTCCTC
TACGAGGCCG AACCCCGGCG CTTCGAGTGG GGCGCGGGTC CTTCGCTGGA ACAGAACTTT
GGTGGCCCCG ACGGCTATCT GTACCGGCTG TCCGCCTATC TTGACGCCAG CTATCACCTC
GCCCAGGGCA CCTGGATCTC GTCGATGCTA TCGACGACCC TGGCGGACAA CCTCGAGAAC
TACGAATACA TCGCCGATTC CGACCTTCCT CGCGTGCGCA CGCACATTGG CGACTACCTC
GCCGAGACCA GCGTCGGCAT CACCAACCTG CAGGCCACCC ATACCAAGCG CCTGGGCAAG
AACTGGTATG CGATGGGCTA TGGCGGCATT CTTGAAACAA TGTACGCAGG TGTCGGTGCC
GAGGTCTTGT ACCGCCCGTT CAACAGCCGC TGGGCCATCG GCGTGGATGC CAACTGGGTA
CGTCAGCGCG AGTTCAACCA GCAGTTCGGC CTGCGGGACT ACGAGCAGGT GACCGGGCAT
GTGACCACTT ACATCGACAC CGGTGTACAG GACATCCATG CACGGGTAAG CGTGGGCCGC
TATCTGGCCG GCGACCTCGG GACCACCCTC GACTTCTCGC GCGAGTTCGC CAATGGCGTG
CGGGTCGGCG CCTGGTCGAC CTTCACCGAC GCCGGTGACG ATTTCGGCGA AGGCAGCTTC
GACAAGGGCC TGTACCTGTC GGTCCCCTAC GACTCCTTCT TCTCCACCTC CAGCCGCAAC
CGGGCCAACA TCGCCTGGCA GCCGCTGACC CGCGACGGTG GTGCCCGCCT GAACCGGCGT
CATCAGCTGT TCGACATCAC CGAAGAACGT CAGGTCGGCC GCTACTGGGA CGAGCCCGAC
GCCACCTGGC GTTAA
|
|---|
| Protein sequence | MNATPLRMRR RSLVVAVLLG LGLPTAQAEE FGLGQGQRDT GGIGLMQTPT ARTGDAGHFA
AGWNRTYPYR RWSVFVQPLD WMELGFRYVQ VENRPYLAAG DDDRYNIDKG ADIKLRLVEE
SRYIPEVAVG FQDLGGTTLF GGEYLVASKR WNNFDFSLGL GWGYLGNHGD IESPLGWIDD
SFDERPRSAG GGQGGEIATH QMFRGPAALF GGVEYQTPWD RLLLQVEYEG NTYQHEPQDN
AQEQDSRFNF GARLKLTNSI ELHTGWQRGN TAMVGLHFTT NLARLSQPKA DDPPPVDPAH
VERRDWDAVA TDLNTNAGIY VTEIRQVGDT IEVTGEPARY RNLKQSEGRA NRLLEAQADA
GIHTFQYRWQ TLGLDLRESL HDREAFGRAL ASADHETDYR HSVRVRDIEP TTNHDRGEVL
YEAEPRRFEW GAGPSLEQNF GGPDGYLYRL SAYLDASYHL AQGTWISSML STTLADNLEN
YEYIADSDLP RVRTHIGDYL AETSVGITNL QATHTKRLGK NWYAMGYGGI LETMYAGVGA
EVLYRPFNSR WAIGVDANWV RQREFNQQFG LRDYEQVTGH VTTYIDTGVQ DIHARVSVGR
YLAGDLGTTL DFSREFANGV RVGAWSTFTD AGDDFGEGSF DKGLYLSVPY DSFFSTSSRN
RANIAWQPLT RDGGARLNRR HQLFDITEER QVGRYWDEPD ATWR
|
|---|
| |