Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TK90_0517 |
Symbol | |
ID | 8806257 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thioalkalivibrio sp. K90mix |
Kingdom | Bacteria |
Replicon accession | NC_013889 |
Strand | - |
Start bp | 539061 |
End bp | 542279 |
Gene Length | 3219 bp |
Protein Length | 1072 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_003459768 |
Protein GI | 289207702 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.251594 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGGCCTGG AATCCACGCC ACTGACGCTG CTGTACGCGC TCAACGGGCT CGCGTTCTTC ACCCTCGGCA TCGTGGCGCT GATGCTGCCG CGCCGCGAAC GGTTTGTGCC TTTCGCCGCT CATGTCGGGT GGCTGGTGCC GTTCGGTCTG CTGCACGGGA CCTATGGTTT CCTCAACGCG ATCGGCCTGC ATCACGAGTT GGGCGTACTC TCCGATCGCT GGTCCATGAC GGCCTGGCTG GCGGTCTCCT ATCTGCCCCT GCTGGAGTTC GGTCGACGCG CGCTGCTCGA CATACGCCCC GGCCTGCACC TGCCGGCCTG GGGCGTGTAC GGGAGTCTCG CCATCGGCCT GAGCGCGATA CTCCTGGTCG CCGTTGAGCC GGCAACCGGG CTCGCCAATG GTGCCCGCTA CCTGATCGGG TTCCCCGGCG CACTCCTCGC AGGGCTCGCA TTCCTGCTGC ACGTTCGTTC CCCGGGGGCA CAGCCGGAGA TGCAGCGACA TATTCCGGCA CTGGGGATCG CAGCCCTCGC GTTTCTGGCC TATGCCGCAT TTCTGCCTTT CCCGGCGCGG GTCGATCTCG GCCTTCCCCC ATGGCTTCCT ACGCAGGGGG ATTTCCTGGC CGCGACCGGG GTGCCGATCC AGACCCTGCG CACCGGAGCC GCGATGCTCT TCACCCTGGC GCTGATCAGC CTCGCGCGCA CCATCGGCGC GCAGCACAGC GACGACTTGC TGCGGGTGCT GGAAACGGTC AACGGCTTTG TGTACCGCTG CCGCAACAAC CCGCAGTGGG ACGTGATCTT CGTCGACGGC GGGGTGCGCG AACTGACCGG CTACGAGGCC CGCGACTTTT ATCGGGGTGA CATCACCTTC GCCGCCTGGG TCCACCCGGA CGATTCCGAC TACACCTGGG AGGGCGTGCA GGAAGGGCTC AAACAGGACG GCCACTACCA GATCCAGTAC CGGGCGGTAA ACCGGGACGG CTCCGTGCGC TGGGTCTTCG AACGCGGGAC CGGCGTGTAC GACGCACATG GGCACCTCAT CTATCTTCAG GGTCACGTGA TCGACGCCCA CGAGCTGGTC ACCACCTCCC GCGAACTCGA ACGCCGCAGC GAGGAGCTCG AGGCCTTTCG CAGCACGCTG GACCTGACGC TGGATGGCGT CTTCCTGTTT GACGTGGACA GCCTGCAGTT CATCTATGTC AACCAGGGCG CGATGGACCA GACCGGTCGT ACTCGCAACG AATTGCTGCA GCTGCACCCG TACGACATCA AGCCGGAGTT CCCCGAGACC CGTTTTCGCA GCATGCTGGA GCCCCTGCGG CGAGGGGAGC GCGACCAGTT GCTGTTCGAG ACCACGCACC AGCACGTCGA CGGACACCTG ATCCCGGTGC ACATCTCGCT ACAGCTGGTC GCCCCCCGGG GCGAGCGCCC GCGCTATGTC GCCATCGTGC ACGACATCAG CCAGCGCAAG CGCAATGAAG AAGCCCTCCT GGAGGCGCTG GAGAGCCTGG AGACCTCGCG CGACGAGCAG GCACGGTTGC TGGAACTCAC ACGGCGCGAG CAGGGGCGCA TGGCCTCGCT GCTCTCGGCC ATGAGCATCG GCATCCTGTT CGAGGATCGC CAGGGGTCCA TCGAGTACGT GAACCCCGCA TTTCGCCGCA TGTGGGCGAT CGCCGACGAG GTCGATCTGG TCGGACAGCC CTCACGTGCC GTGCTGGAAC ATTCCACCCA TCGCTTTGCC CGGCCCGACC ATGCCTCGCG GCATGTACTG CACGTCCTCG ACACCCACGA GATCAGCGAA CGCTTCGAGG TGGACCTCTA TGACGGCCGC ATTCTCACGC AGCTGTCCTA TCCGGTACAC GATGCCGACG AGCGCTCCAT TGGCCGACTG TGGCTGTACG AGGACGTCAC CCACGAGCGC CAGACCGCCC AGCAGCTGGT CTATCTGGCC GAGCACGACC CGCTCACGGG CCTGTACAAC CGCCATCGCT TCCAGCGCCA GCTGGAACAG GCGATCCACA CCGCCCGTCG CCGCGGGACC CACCTGGCCC TGATCTATTT CGATCTCGAC GAGTTCAAGA CCATCAACGA CACCTTCGGC CACCGCGCCG GAGACACCGT GCTGGTGCGC GCGGCAGGCG AGATCGCAAG CCTGGTGCGC GAAGAGGAGA TCTTTGCCCG CCTGGGCGGC GACGAGTTCG CAATTCTGGT CGACCACGCA GCCGAACGGG AACCTGAAGG ACTGGCCGAG CGGGTGGCAC GCGCGATCTC CGCAATCCCG TTCCGCTTCC GCGGGCAAAA TTACCGCCTG ACCGCGAGCA TCGGCATCGC CCGCTACCCC GAGCACGGAG ACAACGTCGA AGACCTGGTG GCCCATGCCG ATGCCGCGAT GTACCAGGCC AAGGACTCGG GCAAGAACAC CTGGGCGGTA TTCGACGCCA GCCGCAACAC CGCCGAACGC ATGCTCGAGC GGATGAGCTG GAGCCAGCGC ATCGGCAAGG CGCTGGAGGG CGGGCAGTTC GAGTTGCACT TCCAGGGGAT CTACCACCTG GACAGCGGGG CGCTCAATCA CATGGAGGCG CTGGTCCGCA TGCGCGACCC GCTGGCACCC GGCGAGGTGG TGATGCCGGG ACAATTCATC CCCGTGGCCG AGAAGACCGG GCAGATCGTC GATATCGACC GCTGGGTGAT CCGCGAGAGC ATCGCACACC TGGCCCGCCA GCCCGAGCTC CCGGGGATCG CGATCAACAT CTCCGGGCGC AGTTTTGACG AACCCGGGCT GCCGCAATAC ATCACCAACG AGCTGAGCCA GCAGGGCGTC GACCCTCGGC GGCTCGTCAT CGAACTGACC GAGACCGCGG CCGTCTCCGA GATGCAGGAC GCCCAGCGCT TCATCGAGGC GTTGCAGCAG GCCGGCTGTC TTGTCTGCCT GGATGACTTT GGATCGGGCT TCTCCACTTT TGCCTACCTC AAGTACCTGG GCGTCCAGGT GCTCAAGATC GACGGCATGT TCGTGCGCGA TCTGCCGAAC AACCGCGACA ACCAGGCGTT CATCCGCGCG ATGGTCGACG TCGCCCGCGG GCTGGACAAG TGGACCGTGG CCGAGTGCGT GGAAGACGGC GACACCCTGG CGATGCTGGC CGACCTGGGG GTCGACATGG TCCAGGGTTA CCATCTGAAT CGCCCCTCGC CGGGTTTCCC GCCGGACCGG GCCCCGTAG
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Protein sequence | MGLESTPLTL LYALNGLAFF TLGIVALMLP RRERFVPFAA HVGWLVPFGL LHGTYGFLNA IGLHHELGVL SDRWSMTAWL AVSYLPLLEF GRRALLDIRP GLHLPAWGVY GSLAIGLSAI LLVAVEPATG LANGARYLIG FPGALLAGLA FLLHVRSPGA QPEMQRHIPA LGIAALAFLA YAAFLPFPAR VDLGLPPWLP TQGDFLAATG VPIQTLRTGA AMLFTLALIS LARTIGAQHS DDLLRVLETV NGFVYRCRNN PQWDVIFVDG GVRELTGYEA RDFYRGDITF AAWVHPDDSD YTWEGVQEGL KQDGHYQIQY RAVNRDGSVR WVFERGTGVY DAHGHLIYLQ GHVIDAHELV TTSRELERRS EELEAFRSTL DLTLDGVFLF DVDSLQFIYV NQGAMDQTGR TRNELLQLHP YDIKPEFPET RFRSMLEPLR RGERDQLLFE TTHQHVDGHL IPVHISLQLV APRGERPRYV AIVHDISQRK RNEEALLEAL ESLETSRDEQ ARLLELTRRE QGRMASLLSA MSIGILFEDR QGSIEYVNPA FRRMWAIADE VDLVGQPSRA VLEHSTHRFA RPDHASRHVL HVLDTHEISE RFEVDLYDGR ILTQLSYPVH DADERSIGRL WLYEDVTHER QTAQQLVYLA EHDPLTGLYN RHRFQRQLEQ AIHTARRRGT HLALIYFDLD EFKTINDTFG HRAGDTVLVR AAGEIASLVR EEEIFARLGG DEFAILVDHA AEREPEGLAE RVARAISAIP FRFRGQNYRL TASIGIARYP EHGDNVEDLV AHADAAMYQA KDSGKNTWAV FDASRNTAER MLERMSWSQR IGKALEGGQF ELHFQGIYHL DSGALNHMEA LVRMRDPLAP GEVVMPGQFI PVAEKTGQIV DIDRWVIRES IAHLARQPEL PGIAINISGR SFDEPGLPQY ITNELSQQGV DPRRLVIELT ETAAVSEMQD AQRFIEALQQ AGCLVCLDDF GSGFSTFAYL KYLGVQVLKI DGMFVRDLPN NRDNQAFIRA MVDVARGLDK WTVAECVEDG DTLAMLADLG VDMVQGYHLN RPSPGFPPDR AP
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