| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_0462 |
|---|
| Symbol | |
|---|
| ID | 8806202 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. K90mix |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013889 |
|---|
| Strand | - |
|---|
| Start bp | 478722 |
|---|
| End bp | 480794 |
|---|
| Gene Length | 2073 bp |
|---|
| Protein Length | 690 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_003459713 |
|---|
| Protein GI | 289207647 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAA CCATCCGAAT CCTCTTCGTC ACAGCGAACC CGAATCTCGC CGAGCAAGTC
ATCAGCAGCA TTCGTACGCG GGGTAGCGCG GTACGGCCGG AACAGGTCGA GACCCAGGAT
GACCTGATCA ACGCGCTGGA GAACACTCGA CACGATGTGG TGGTATTGAT CGAGCCGGGT
CTCGCGCTCT CGCGCGAGGT GGTCGATACC GCCCTGCGCG ACAGTGGGCG CCGCATCCCG
CTGGTCCTGC TGACCGAGCG TCCGGAGCCC GAGCGCGTCC TGGACTACGA GGCCGGGAGT
TTCGCCGTGG TCGATCACGA ACAGGTGGAA CTGGCGAGCC TGATGGCCAT CCGTGCGGCC
GAACAGCGGC GCCTGCGCCA ACGCATCCAG CGCCTCGAGG CCGCGCTGCA CGAGTCGGAA
AACCGCTGCC AGTTGCTGCT CGACAACTCG CGCGATGCGA TTGCCTATGT GCACGAGGGC
ATGCACCTGT ACGCGAACGC CTCCTGGCGC GAGCGCTTCG GTATCGAGGA TCCGGACGAG
GTCGACGGGC TGCCACTGAT GGACTTGGTC ACGGCCGATA ACCGCGGCGA GATGAAGGCG
CTGCTGCGCC GCTTCCAGAA TGGCGAGGAA GGCGATACGG CTCGCGCCCA CTTCCACCTG
CAGAGCATCG ATGGCCTGCC ATTCGAGGCC GACCTGCGCC TGTCCGCCGC AAGCGTGGAG
GGCGAGGCCT GCACCCAGCT CCAGCTGGAA GCCAGCCAGG AAGACCCCGA GCTGGCGGAG
CGAATCGACT TCCTCTCGCA GCGCGATCTG GTCACCGGCT TGTACAACCG CCAGCACTTC
CTGTCCGCGA TCGAGAGCGC TCAGACCCGG GCCGAGGAGA CGGAGAAACC CTTTGCCCTG
CTGACCCTGG CAGTCGACCG CTTCGCGGAG ATCCGCGCGA AGGTCGGGAT GTCCGCCGCC
GACCTGCTCC TGGCCGACAT GGGCAAGCTG ATCGAGGATC ACTTCCCCGA ACCCGCGATT
GCCGCGCGCC TGGAGGGCGA GCACTTCGGC GTGCTGGCGC CAGAGACCCG CCGCCAGGAG
GTCGAAGAGC GGGTCCACGG CCTGATGCAG GCCGTCACCG CACATGTCTT CGAACTCAAC
CAGTCGTCGA CCAACTGCAC CCTGTCGGCC GGCGTGGTGA TCGCCGACGA GAGCGCCCCC
AGCACCGAAG ATCTGCTCGA CCAGGCCCAC CGGGCGCTGG AGGAGGCCGT CGAGGCGGGC
GGCGGCGTCC ATCGGTTCTA CCACCCGGCC GAGGGCGAAT TGACCCAGGG TCAGGCCGAC
CAGCAGTGGA AGCTGCGTAT CCAGGACGCC CTGGACCATG ACCGCCTGGA GCTTCGCTTC
CAGCCGATCG TGCATCTGCA CGGCAACGAC CGGCCGCGCT ATTCGGTGTT CGTGCGCCTG
CGCGACGCCG ACGGCCACCT GCACGAACCA CCCGCCTTCC TGCCTGCGGC CGAACGCACC
GGCATGGCCC CGGCCGTGGA TCGCTGGATC GTCAAGACCG CGCTGACCGA ACTCGCCGGG
TGCCTGAAGA CCCAGCCCAA GACCCAGTTT TTCCTGAAGC TGGGCACCGG CTCAATGGGC
GATCCGACCG TGGTCAGCTG GCTCAACGAT GACCTGCACG CCCTGCGCAT CCCGGCCGAC
AACGTCGTGG TCGAGCTCAA GGAGCCGACC GTTGTCACCA ACCTGAAGCC AGCGATGAAT
GTATCGCGCG GCCTGGTCGA GATGCACAGC CACCTGTGCA TCGACGACTT CGGCAATGGC
CTGAACCCGT TCCAGCTGCT GCAGCACCTG GAGGCCGACC ACATCAAGCT CGACCCGTCG
TTCGTCGAGG GGCTGGCGGA GAACGAGGAA AACCAGGAGG CGATCCGCGA ATATGTCGAT
GCGGCACACG CCAAGGGCAA GCAGGTAATC GTGCCGCACG TGGAGGATGC CAGCGTGCTG
GCCGTGCTCT ACGGGCTGAA CGTCAACCTG GTGCAGGGGT ACTTCATCCA GTCGCCTCTC
GCCAAACCAA CGTTCGACTT CGAGGCGACC TGA
|
|---|
| Protein sequence | MSETIRILFV TANPNLAEQV ISSIRTRGSA VRPEQVETQD DLINALENTR HDVVVLIEPG
LALSREVVDT ALRDSGRRIP LVLLTERPEP ERVLDYEAGS FAVVDHEQVE LASLMAIRAA
EQRRLRQRIQ RLEAALHESE NRCQLLLDNS RDAIAYVHEG MHLYANASWR ERFGIEDPDE
VDGLPLMDLV TADNRGEMKA LLRRFQNGEE GDTARAHFHL QSIDGLPFEA DLRLSAASVE
GEACTQLQLE ASQEDPELAE RIDFLSQRDL VTGLYNRQHF LSAIESAQTR AEETEKPFAL
LTLAVDRFAE IRAKVGMSAA DLLLADMGKL IEDHFPEPAI AARLEGEHFG VLAPETRRQE
VEERVHGLMQ AVTAHVFELN QSSTNCTLSA GVVIADESAP STEDLLDQAH RALEEAVEAG
GGVHRFYHPA EGELTQGQAD QQWKLRIQDA LDHDRLELRF QPIVHLHGND RPRYSVFVRL
RDADGHLHEP PAFLPAAERT GMAPAVDRWI VKTALTELAG CLKTQPKTQF FLKLGTGSMG
DPTVVSWLND DLHALRIPAD NVVVELKEPT VVTNLKPAMN VSRGLVEMHS HLCIDDFGNG
LNPFQLLQHL EADHIKLDPS FVEGLAENEE NQEAIREYVD AAHAKGKQVI VPHVEDASVL
AVLYGLNVNL VQGYFIQSPL AKPTFDFEAT
|
|---|
| |