Gene TK90_0370 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTK90_0370 
Symbol 
ID8806105 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThioalkalivibrio sp. K90mix 
KingdomBacteria 
Replicon accessionNC_013889 
Strand
Start bp390955 
End bp392448 
Gene Length1494 bp 
Protein Length497 aa 
Translation table11 
GC content65% 
IMG OID 
ProductRNA polymerase, sigma 54 subunit, RpoN 
Protein accessionYP_003459621 
Protein GI289207555 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.273387 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGAAGC CCGGGCTTAA TCTGCAGCTG GGGCAGACGC TGACGATGAC CCCGCAGCTG 
CAACAGGCGA TCCGTCTGCT GCAGCTTTCC ACGCTGGAGT TGCAGGCGGA GATCCAGCAG
GCGCTGGAAA GCAACCCCAT GCTCGAGCAG GTGGAGGACG AGGGCGAGGA GGCCCCGCCC
GAGCGCCCGG AGGAAGGGGG CGAACGGGTC GACGGGGATC GCATGCAGGC CGACACGGCT
GGCGATGACG TGATCCCCGA GGAGTTGAGC ACCGACAGTC GCTGGGACGA CATCTACGAG
CCCGCCCCGA GCCCACGCGG CCTGGACGAC CGCGACCCGC TGGAGAATAC CTCCGACGGC
GAGGACGAGG GCCTGCAGGA CCACCTGCTC TGGCAGCTGC ATCTGAGCCA CCTGACCCCA
CGAGACCAAC GGATCGGGGC GGCGCTGATC GACGCGATCA GCCCGGACGG CTATCTGGAC
AGTGAACTCG AGGCGCTGGC GGAGATGATC AGCCAGGGCG AAGACGAGCC CGTGGGGGTC
GACGAGGTCG AGGCGGTGCT GCACTGGATT CAGCAGTGCG ACCCGCTGGG CGTCGGTGCG
CGGGACCTGC GCGAGTGCCT GGAGATCCAG CTGCGCCATT TGGCGCCGGA TGCCCCGGCG
CGTGACGCGG CTCGAGCCAT CCTGGAAAAC GGCATGGAGA GCCTGGCCAA GCGGGACTAC
CGAGCCCTGC AGCGCCAGTC CGGCGTGCGC GACCCGGACG AGCTGGCGCG GGCGCTGGAC
CTGATCCGCA CCCTGAATCC GCGGCCCGGT GCCCAGATCA GCGAGTCCAC TTCGGAATAT
GTGGTGCCGG ATGTCTATGT CCGCCATGAC CGCGATGGCT GGCGCGTGGA CTTGAACCCG
GAGATTGCGC CGCGCATTCG CATCAACGAT CTCTATGCGG GCATGGTGCG GCAGGTCTCC
GATGCGCGTG ATAGCGCGTT TATGCGCGAT CAGTTGCAGG AGGCGCGCTG GTTCCTGAAG
AGCCTGCACA GCCGGAACGA CACCCTGCTG CGGGTCGCCC AGGCCATCGT CGTGCGCCAG
CAGGGGTTTC TCGAGCATGG TGAGGTTGCC ATGCAACCGC TGATCCTGCG CGATATCGCC
GAGACCCTGG AGATGCACGA ATCGACCATC TCGAGGGTGA CTACACAGAA ATACATGCAC
ACCCCGCGTG GGGTATTCGA GTTCAAGTAC TTCTTTTCCA GTCATGTTGG CACAGCCGAT
GGCGGCGAAT GCTCGGCGAC CGCGATCCGT GCCATGATTC GGGAATTGAT TGGTGGCGAG
ACCCCGAACA AGCCACTGAG TGATGCAAAA CTGGCCCAGA TCCTGTCGGA TCGGGGCATT
AATGTGGCCC GACGCACCGT GGCCAAGTAC CGCGAGGCTA TGCACATACC GTCTTCCAGC
GAACGCCGGC AGATGGCGAG TATGCCCAGT GGAACCAAGC AAAAAGGAGC CTGA
 
Protein sequence
MLKPGLNLQL GQTLTMTPQL QQAIRLLQLS TLELQAEIQQ ALESNPMLEQ VEDEGEEAPP 
ERPEEGGERV DGDRMQADTA GDDVIPEELS TDSRWDDIYE PAPSPRGLDD RDPLENTSDG
EDEGLQDHLL WQLHLSHLTP RDQRIGAALI DAISPDGYLD SELEALAEMI SQGEDEPVGV
DEVEAVLHWI QQCDPLGVGA RDLRECLEIQ LRHLAPDAPA RDAARAILEN GMESLAKRDY
RALQRQSGVR DPDELARALD LIRTLNPRPG AQISESTSEY VVPDVYVRHD RDGWRVDLNP
EIAPRIRIND LYAGMVRQVS DARDSAFMRD QLQEARWFLK SLHSRNDTLL RVAQAIVVRQ
QGFLEHGEVA MQPLILRDIA ETLEMHESTI SRVTTQKYMH TPRGVFEFKY FFSSHVGTAD
GGECSATAIR AMIRELIGGE TPNKPLSDAK LAQILSDRGI NVARRTVAKY REAMHIPSSS
ERRQMASMPS GTKQKGA