| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_0279 |
|---|
| Symbol | |
|---|
| ID | 8806010 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. K90mix |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013889 |
|---|
| Strand | + |
|---|
| Start bp | 292603 |
|---|
| End bp | 294735 |
|---|
| Gene Length | 2133 bp |
|---|
| Protein Length | 710 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | |
|---|
| Product | type IV pilus secretin PilQ |
|---|
| Protein accession | YP_003459530 |
|---|
| Protein GI | 289207464 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.881103 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAGC GAATGGGCCG CAAGACCGGC AACAACTACA GGGGATTACA CATGGGTTCT
TCCATGCGCG CGCTGGCGGG CACCGTGATG GCGGCTTTGC TGTTCATGGT TTCGCAGGGG
GTGGCGGCGA CCGAACTGGA AGAGATTCGG GCGGCCAGCA TTAGCGGTGA CCGGGTGCAG
GTGAATCTGC GCTTTTCCGG CACTCCGCCC GAAGATGTCC GGGCCTTCGC CATCGACTCC
CCGCCGCGGA TCGCACTGGA TCTCCCGGAT GCCGGCAATG CGCTGCGCAG CCGCGAGACG
GACCTCAACG TGGGGCCCCT GCTGACCGCT ACAGCGGTCG AGTCCGGTGA TCGTACGCGC
GTGGTGCTGA ACCTGACCCA GCCCTCCGAG TATCAGACCC GGGTCGAAGG CAACAACCTG
ATTCTGACCC TCGGCCGCGG GGTCTCCGAG GCCGACAGCG ATGTACAGCA GGTGGTCGAT
CGTGCCGGCG AGCCCTCCGA ACGGGCGACG CGCAGTGCGC GCCCGGTCGA GATTACCGGC
ATCGATTTTC GTCGCGGTTC CGAGGGCGAA GGCCGGGTCG AGATCGACCT GTCGCGCTCG
GGGGCCGAGG TCAATGTGCG CGAGCAGGCC GGCAAGGTCG AGCTGACGTT CCCGCGCGCT
CGTGTGGACG AATCCCTGGA GCGCCGCCTG GACGTGCTCG ATTTCGCCAC ACCCGTTCGC
ACCATCGATA CTGTGGCCGA GCGCGAGCGT GTGCGCATGG AAGTGGACGC ACACGGCGAA
TACGAGGTCC TGTCCTATCA GAGCGACCGG CGCTTTGTGC TGGAGGTGGC GCCCATTACC
GAGGCCGAAC GCGAGGCCCG GCGGCGTGAG GAAGAACAGT TCGAGGGCGA GCGCCTGTCG
CTGAACTTCC AGGACATCGA GGTGCGCTCG GTCCTGCAGC TGCTGGCCGA CTTTACCGAT
CTCAACATCG TGGTCAGCGA TACTGTCGGT GGCAACATCA CCTTGCGCTT GAACAACGTG
CCCTGGGATC AGGCGCTGGA CATCATCCTG CGCTCGCGTG GTCTGGACAA GCGCATGGAC
GGAAACGTGC TCTACGTGGC CCCGAGCGAA GAGATTGCGG CCCGCGAGCG CCTGGAGATG
GAGGCCGCGC GTGACCGCCA GGAGCTGGAG CCGCTGCGCA CCGAATTCGT CCAGATCAAC
TTTGCTCAGG CCGAACAGAT TGCCTCGCTC ATTCGTGGTG ACGAGACCGG CCAGTTCCTG
TCCGATCGCG GCAGCATCAC CATCGACAGC CGCACGAACA CCCTGCTGGT ACAGGACACG
CAGAGTCGCA TTGAGGACGT GCGCCGTCTG GTGCAGACGC TCGACGTACC GGTGCAGCAG
GTGCTGATCG AGACGCGCAT CGTGATCGCT GAGGATACCT TTAATCGTGA ACTAGGGGCC
CGCTTCGGTA TCTCCGGGAC GCGCGGTGAT CGTCGCACGC GGGTTGGCGG TGCCGGTTCC
ATCGAAGGGG CGGATGCCGC CCGGGATGCG TCCACCGCCG GGGTGGGCGG TATCGCGATC
GGCGACCGGC TCAACAGCTC GCTGCCGGCC AGTGGCGACG CAGGCCGGGC CGGCATCAGT
CTCCTGCGCA GTGGTGTGCT GCTCGATCTC GAGCTGTCGG CCCTGCAGGT CGAGGGACGT
GGCGAGATCA TCTCCAGCCC GCGTGTGATT ACGGCCAATG GCCAGACTGC CTCGATCAAG
CAGGGTGAGG AGATCCCGTT CCAGGAGGCC ACCGCCTCCG GTGCGACGTC CACCCAGTTC
ATCGAGGCCG TGCTCTCGAC CGAGGTTACG CCGCAGATCA CGCCGAATGG CAACGTGATC
CTCGATATCC GGGTCACCAA GGACGAGCCC AGCCAGCGTG AGGTGCTGGG CGTGCCCGGG
ATCAACAAGC GCGAGGTCAA CACGCAGGTG TTCGTCGGCA ACGGCGAGAC CGTGGTGCTG
GGTGGGGTGT ACGAGATTGA CAGCCGTACC AACCTCGAGA AGGTGCCGTT CTTCGGGGAT
ATCCCGTTCC TTGGCAATCT CTTCCGCAAT CGCTCCACCG AGAACACCAA GGCCGAGCTG
CTGATCTTTG TGACGCCGCG CGTGCTCGAC TAG
|
|---|
| Protein sequence | MMKRMGRKTG NNYRGLHMGS SMRALAGTVM AALLFMVSQG VAATELEEIR AASISGDRVQ
VNLRFSGTPP EDVRAFAIDS PPRIALDLPD AGNALRSRET DLNVGPLLTA TAVESGDRTR
VVLNLTQPSE YQTRVEGNNL ILTLGRGVSE ADSDVQQVVD RAGEPSERAT RSARPVEITG
IDFRRGSEGE GRVEIDLSRS GAEVNVREQA GKVELTFPRA RVDESLERRL DVLDFATPVR
TIDTVAERER VRMEVDAHGE YEVLSYQSDR RFVLEVAPIT EAEREARRRE EEQFEGERLS
LNFQDIEVRS VLQLLADFTD LNIVVSDTVG GNITLRLNNV PWDQALDIIL RSRGLDKRMD
GNVLYVAPSE EIAARERLEM EAARDRQELE PLRTEFVQIN FAQAEQIASL IRGDETGQFL
SDRGSITIDS RTNTLLVQDT QSRIEDVRRL VQTLDVPVQQ VLIETRIVIA EDTFNRELGA
RFGISGTRGD RRTRVGGAGS IEGADAARDA STAGVGGIAI GDRLNSSLPA SGDAGRAGIS
LLRSGVLLDL ELSALQVEGR GEIISSPRVI TANGQTASIK QGEEIPFQEA TASGATSTQF
IEAVLSTEVT PQITPNGNVI LDIRVTKDEP SQREVLGVPG INKREVNTQV FVGNGETVVL
GGVYEIDSRT NLEKVPFFGD IPFLGNLFRN RSTENTKAEL LIFVTPRVLD
|
|---|
| |