| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_0263 |
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| Symbol | |
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| ID | 8805994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. K90mix |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013889 |
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| Strand | - |
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| Start bp | 270287 |
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| End bp | 272176 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_003459514 |
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| Protein GI | 289207448 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.262087 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGTG AAGAGCAACA ATCCCAGCTC AAGGAACTGA TTGCCAAGGG CAAGGAGCAG
GGATACCTCA CGTATACCGA GGTCAACGAC CACCTGCCCG ACTCGATCAT CGACTCCGAC
CAGGTCGAGG ACATCATTGC GATGATCAAC GACATGGGCA TCGCGGTGCA CGAGCAGGCC
CCGGACGCCG ACAGCCTGCT GTTGTCCGAT GGCTCCGTCT CCGCCGACGA GGACGCCGAA
GACGCCGTGG CCGCGCTCGC CTCGGCCGAT TCCGATTTCG GTCGCACCAC CGACCCCGTG
CGCATGTACA TGCGCGAGAT GGGCACGGTC GAACTGCTGA CCCGCGAAGG CGAGATCCGC
ATCGCCAAGC GTATCGAAGA GGGCCTGATG CAGGTCCTGT TCGCGCTCGC CCATCACCCG
GGCGCGATCG AACACCTGAT CCGCGAGTAC GACCAGATCG TCGAGAACAA CGGCCGTCTG
ACCGATCTCG TGGTCTCCTT CATCGACCCG AAGAACCCGC TGGATGGCGA AGCCGTCGCG
CGCGGGCTGG TCTCCCCGGA AGACGCCCAG AAGGCCGAGG AAGCCCAGAA GGCCGCGGCC
GCCGAGGCCT CGCCGGAGCT GGACGCGATC GTGGAAGAGG TCGAAGACGC CGAGGAAGAA
GACGCCGAAC CGGTGGACAC CGGCCCCGAC CCGGAAGAGG CGCGCGAGCG CTTCAACAAG
CTGCGCAAGC TGCACGCCAA GGCGCACAAG GCCTTCGAAA AGGGCGACCG CAAGGCCTAC
GCCACCGCGC GCGAGGCCAC CGCCAAGTAC TTCATGGAGT TCAAGCTGGT GCCGCGCATG
GTGGACCAGC TGACCACCAA GCTGCACGGC ACCATCGACC GCATCCGCAG CCATGAGCGC
CGCATCATGG AACTGGCCGT GAACCAGGCG CAGATGCCGC GCAAGTCGTT CATCGACAGC
TTCCCGAAGA ACGAGACCAA CCTCGACTGG ATCAAGCAGG CCTGCAAGGC CAAGGGCAAG
TACACCACTG CCCTGGCCGA GCACGAGGAC GAGATCGTGC GCCTGCAGAA GAAACTCGCC
GAGATCGAAC ACGAGGCCAG CCTGAACATC TCCGAGATCA AGGAGATCAA CCGCCGCATG
TCCATCGGCG AGGCCAAGGC CCGCCGCGCG AAGAAGGAGA TGGTCGAGGC CAACCTGCGC
CTGGTGATCT CCATCGCCAA GAAGTACACC AACCGCGGCC TGCAGTTCCT CGACCTGATC
CAGGAAGGCA ACATCGGCCT GATGAAGGCC GTGGACAAGT TCGAATACCG TCGCGGCTAC
AAGTTCTCGA CCTACGCCAC CTGGTGGATT CGCCAGGCCA TCACCCGCTC CATCGCGGAC
CAGGCCCGGA CCATCCGCAT CCCGGTGCAC ATGATCGAGA CGATCAACAA GCTCAACCGC
GTCTCCCGCC AGATGCTGCA GGAGATGGGC CGCGAGGCCA CGCCGGAAGA GCTGGCCGAA
CGCATGGAGA TGCCCGAGGA CAAGATCCGC AAGGTGCTCA AGATCTCCAA GGAACCGATC
TCCATGGAGA CCCCGATCGG CGACGACGAA GACTCCCACC TGGGCGACTT CATCGAAGAC
GAGAAGGTCG CCTCGCCATC CGACTCCGCC GCGCGCGAGA GCCTGTCCGA GGCCACCCGC
GAGATCCTGT CCACGCTGAC CCCGCGCGAG GCCAAGGTCC TGCGCATGCG CTTCGGCATC
GACATGAACA CCGACCACAC CCTCGAGGAA GTCGGCAAGC AGTTCGACGT CACCCGCGAG
CGCATCCGCC AGATCGAGGC CAAGGCCCTG CGCAAGCTGC GTCACCCGAC CCGCGCCGAA
CTGCTGCGCA CCTACACCGA CGCCGAATAA
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| Protein sequence | MNREEQQSQL KELIAKGKEQ GYLTYTEVND HLPDSIIDSD QVEDIIAMIN DMGIAVHEQA
PDADSLLLSD GSVSADEDAE DAVAALASAD SDFGRTTDPV RMYMREMGTV ELLTREGEIR
IAKRIEEGLM QVLFALAHHP GAIEHLIREY DQIVENNGRL TDLVVSFIDP KNPLDGEAVA
RGLVSPEDAQ KAEEAQKAAA AEASPELDAI VEEVEDAEEE DAEPVDTGPD PEEARERFNK
LRKLHAKAHK AFEKGDRKAY ATAREATAKY FMEFKLVPRM VDQLTTKLHG TIDRIRSHER
RIMELAVNQA QMPRKSFIDS FPKNETNLDW IKQACKAKGK YTTALAEHED EIVRLQKKLA
EIEHEASLNI SEIKEINRRM SIGEAKARRA KKEMVEANLR LVISIAKKYT NRGLQFLDLI
QEGNIGLMKA VDKFEYRRGY KFSTYATWWI RQAITRSIAD QARTIRIPVH MIETINKLNR
VSRQMLQEMG REATPEELAE RMEMPEDKIR KVLKISKEPI SMETPIGDDE DSHLGDFIED
EKVASPSDSA ARESLSEATR EILSTLTPRE AKVLRMRFGI DMNTDHTLEE VGKQFDVTRE
RIRQIEAKAL RKLRHPTRAE LLRTYTDAE
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