| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gobs_4988 |
|---|
| Symbol | |
|---|
| ID | 8756690 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geodermatophilus obscurus DSM 43160 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013757 |
|---|
| Strand | + |
|---|
| Start bp | 5200550 |
|---|
| End bp | 5203150 |
|---|
| Gene Length | 2601 bp |
|---|
| Protein Length | 866 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_003411887 |
|---|
| Protein GI | 284993332 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.952168 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAGGGAT CCCCGCGGCA GCGCGGCGCT GTGCGCACGT CCGACCTCGA GTCGGCGGCC
GAGGTGCTGC GCGACGACCC CGCGCGCACC CGCGCGGCCC GTCGCCTCCG CATCGCCCAG
CACGGCTCCC TCGCCGTCGA CCGGCTGGTG GAGCTGGCCG CGCGGCTGCT CGGCGCGCAG
GCCGGCCAGA TCTCGCTGCT CGACGACGTC CAGTCGGTCG CCGCTGTCGC CGGGCTGCCG
CCGGGTGCCG CGACCAGGGA GACCGGCCTC GCCGACACGC CCTGCACGCT CGCCGCGGCC
GGCAACGAGG TGCTCGCCAT CTCCGACGCC CGGGCCGACG AGCGGGTCGG CCGGCTGCCG
CAGGTGACCG GCGGACAGGT CGTCGCCTAC CTCGGCGCCC CGCTGACCGA CGGGGAGGGC
CACGTCGTCG GGACGCTGTG CGTGTTCGAC CCGCTGTCCC GGGAGTGGTC GGAGACCGAC
GCCGCCACGC TGCAGCAGCT CGCCGCCTCG GTGGTGACCG AGCTCGAGTA CGCGGCGCTG
ACCGGCGAGT ACGAGCGTCA GCACCTGCGC TGGCGGCTGG CGATGGACGC CGGCGGGGTG
GGCACCTTCG ACTGGGACCT GCGGTCCGGC GAGCTGGTGT GGGACGACCC GCTGATGGCG
ATGTTCGGCT ACACCCTCGA CGACTTCGAC GGCACCATCA CCGCCTTCAA CCGGCGGCTG
CACCCCGACG ACCTGCCCCG CGTCAGCGAG GCGCTGCGCG CCTGCATCGA CCTCGTCGGC
GACTTCGAGG CGGAGTACCG CGTCGTCCGC CCCGACGGCG AGACCCGCTG GGTGCAGGCC
CGCGGCCGGG CGCTGGCGGG CGCGGACGGC AGCACCATCC GCGTGCTCGG CGCCGCGTAC
GACACCACCG AGGACCGCAC CGGCGACGTC CGCGTCGCGC GCGTCCTCGA GGCGATGCCG
GCCGGCTTCT ACTCGCTCGA CCACGAGTGG CGCTTCACGC ACGTCAACGC CGAGGCCGAG
CGGCTGCTCG GCCGCAGCCG CGAGGAGCTG CTCGGCCAGG TCATCTGGAC GGCGTTCCCG
GCGACGGTGA ACAGCGACTT CGAGAAGTAC TACCGCAGCG CGGTGCGGAG CGGGGAGCCG
GTCAACTTCG ACGCGCACTA CCCCGCGCCG CTCGACGGCT GGTACGAGCT GCGCGCCTGG
CCCAGCCCCG AGGGCCTGTC GGTCTACTTC ATCGAGGTCA CCGAACGGAA GCAGGCCCGC
GAGCACGCCG AGCGCTCGGC GCAGCGGCTG GCCCTGCTCG CGCAGGTCAG CGCGGAGCTG
GCCGGGACGC TGGACGCCCA GGCCGCCACC AGCCGCCTCC CCCGGCTGGT CGTCCCCGGA
CTGGCGCAGT GGGGCATCGT CACCGTGGTC GACGCCGACG GACGCCCGCG CGACGTCGGC
TGGTGGCACG CGGAGCCGTC GTCGCGCGCG CTGGTCGAGC GCTACGCCGC CGTCCGGCTG
GACGCGATGC CGGCCACCTC GCCCGTGGCG CGGGCCCTGC TGGCCGGTGA GGCGGTGCGG
GCGAACGCCG ACGAGGTGGT CGCCCTCCTG GCCGACGGCG AGGCGCGCGA CCTGCTGACC
GCGCTGGCAC CGGGCGCGGC GGTCTGCCTG CCGCTGCGCG GGCGGGGACG CACCCTGGGC
GTGCTGACCC TCTACTTCGG CCGCGGCGAC ATGCTGTCGC GGGAGGACCT CGCCACCGCG
CAGGACGTCG CCGACCGCGC CGGCCTGGCC CTGGACAACA CCCGGCTCTA CACCCAGCAG
CAGCAGCTGG CCGAGGGACT GCAGCGCAGC CTGCTCACCG AGCCGCCGGA GCCCGACCAC
GCCGAGATCG CCGTCCGCTA CCTGCCCGCC ATCGAGGCAG CGCGGGTCGG CGGCGACTGG
TACGACGCGT TCCTGCAGCC CAGCGGCGCG ACGATGCTGG TCATCGGCGA CGTCGTGGGG
CACGACACGG AGGCGGCCGC GGCCATGGGC CAGCTGCGCG GGCTGCTGCG CGGCATCGCC
ACCTACAGCG ACGCGTCACC CGTGGAGGTG CTCCGCGGGC TGGACGCCTC GATGGCGGTG
CTGCAGACCC ACGTGCTGGC CACGGCCGCG CTGGCCCGCT TCGAGCAGAC CGACGACGAG
CGCCGGCGCG GCATCACCCG CATGCGCTGG GCGAACGCCG GACACCTGCC GCCGCTGGTT
ATCAACCCCG ACGGCAGTGT GGCCGAGCTC GCCGCCTGGA GGGGCGACCT GCTGCTGGGC
GTCGACCACG AGGTCGAGCG CCGGGAGTCG GTGGTGACCC TCGACCGCGG GTCCACGGTG
CTGCTGTTCA CCGACGGGCT CGTCGAGCGG CGCGACGCCG ACCTGGACGC CGGCCTGGTG
CGGTTGCGGG AGGCGCTCGC CGAGGTGTCC CACCTGCCGC TCCAGCAGCT GCTCGACGAG
GTGCTCGAAC GGCTGGTCGA CGGCCGGCCC GAGGACGACG TCGCGCTGGT CGCCGTCCGC
CTGCACCGCC AGGACCGCCC GCGCCCGGTC GAGGCCGGCC CCAACGAGGT CCCGGACGTC
GTCCCGCCGG ACCCGGCCTG A
|
|---|
| Protein sequence | MEGSPRQRGA VRTSDLESAA EVLRDDPART RAARRLRIAQ HGSLAVDRLV ELAARLLGAQ
AGQISLLDDV QSVAAVAGLP PGAATRETGL ADTPCTLAAA GNEVLAISDA RADERVGRLP
QVTGGQVVAY LGAPLTDGEG HVVGTLCVFD PLSREWSETD AATLQQLAAS VVTELEYAAL
TGEYERQHLR WRLAMDAGGV GTFDWDLRSG ELVWDDPLMA MFGYTLDDFD GTITAFNRRL
HPDDLPRVSE ALRACIDLVG DFEAEYRVVR PDGETRWVQA RGRALAGADG STIRVLGAAY
DTTEDRTGDV RVARVLEAMP AGFYSLDHEW RFTHVNAEAE RLLGRSREEL LGQVIWTAFP
ATVNSDFEKY YRSAVRSGEP VNFDAHYPAP LDGWYELRAW PSPEGLSVYF IEVTERKQAR
EHAERSAQRL ALLAQVSAEL AGTLDAQAAT SRLPRLVVPG LAQWGIVTVV DADGRPRDVG
WWHAEPSSRA LVERYAAVRL DAMPATSPVA RALLAGEAVR ANADEVVALL ADGEARDLLT
ALAPGAAVCL PLRGRGRTLG VLTLYFGRGD MLSREDLATA QDVADRAGLA LDNTRLYTQQ
QQLAEGLQRS LLTEPPEPDH AEIAVRYLPA IEAARVGGDW YDAFLQPSGA TMLVIGDVVG
HDTEAAAAMG QLRGLLRGIA TYSDASPVEV LRGLDASMAV LQTHVLATAA LARFEQTDDE
RRRGITRMRW ANAGHLPPLV INPDGSVAEL AAWRGDLLLG VDHEVERRES VVTLDRGSTV
LLFTDGLVER RDADLDAGLV RLREALAEVS HLPLQQLLDE VLERLVDGRP EDDVALVAVR
LHRQDRPRPV EAGPNEVPDV VPPDPA
|
|---|
| |