| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gobs_3171 |
|---|
| Symbol | |
|---|
| ID | 8754847 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geodermatophilus obscurus DSM 43160 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013757 |
|---|
| Strand | - |
|---|
| Start bp | 3326935 |
|---|
| End bp | 3329520 |
|---|
| Gene Length | 2586 bp |
|---|
| Protein Length | 861 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | |
|---|
| Product | (p)ppGpp synthetase I, SpoT/RelA |
|---|
| Protein accession | YP_003410148 |
|---|
| Protein GI | 284991594 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.100702 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCCCCG ACGCCGCCAC CAACGTGGCT GCCGCGCGGC CCGACGCGCC GGCCCTGCCG
GCCAGGGATG GAGCGCCGGC CCTGCCGGCC GGGGATGGAG CGCCGGCCCT GACGGCCGGG
GATGGAGCGC CGGCCCTGAC GGCCAGGGAT GGAGCGCCGG CCCTGCCGGT GGGGGAGGGA
ACTCCGGCCC TGCCCCCGGG CGCCGACACC GTCGACGGGG CCGAGCGCCC GCCGCTGCCG
AGCCGCCCGC TGGTCCGCCG TCCGGACGAC GTGGGCACCG AGCCCCCCGG CGAGCAGGAC
CCGCAGGGCG GTGCAAGCCG CCGCCGGGTG CGCGACCGGC TGGCCCGGCG CATCGTCGCC
GGCCAGCGCA GCACGGTGGT CCGTCCGGTG CTCGAGCCGC TGGCGGTGCT CCACCGGCAG
AGTCACCCCA AGGCCGACCT CGCCCTCCTC CAGCGCGCCT ACGACGTCGC CGAGGCGGCG
CACGCGACGC AGAAGCGCAA GAGCGGCGAC CCCTACATCA CCCACCCGCT GGCCGTGGCC
ACCATCCTGG CCGGGTTGGG CATGGACACC ACCACGCTGG TCGCGGCGCT GCTGCACGAC
ACGGTCGAGG ACACCGGCCA GACGCTGGAG TCGATCAGAG AGGCGTTCGG CCCCGAGGTC
GCCCACCTCG TCGACGGCGT CACCAAGATC GACCGGGTCA AGCTCGGGGA CGCCGCCCAG
GCCGAGACGA TCCGCAAGAT GATCGTGGCG ATGGCCCGCG ACCCCCGGGT GCTGGTCATC
AAGCTCGCCG ACCGGCTGCA CAACATGCGC ACGCTGCGCT TCCTCCCGCC GGAGAAGCAG
GAGAGGAAGG CGCGCGAGAC GCTGGAGATC CTCGCCCCGC TGGCCCACCG GCTGGGCATG
AACACCATCA AGTGGGAGCT CGAGGACCTC GCGTTCGCCA CGCTCTACCC CAAGCGCTAC
GACGAGATCG TGCGGCTGGT CGCCGAGCGG GCGCCGTCGC GGGACACCTA CCTCGCCGAG
GTCACCGCGG CGGTCACCGA CCAGCTCAAG GCGGCCGGCA TCCCGGCCGT CGTCACCGGC
CGGCCCAAGC ACTACTACTC GATCTACCAG AAGATGATCG TCCGCGGCCG GGACTTCACC
GACATCTGGG ACCTCGTCGG CATCCGGATC CTGGTCGACT CGGTCCGCGA CTGCTACGCG
GCGCTGGGCA TCATGCACGC GCACTGGCAG CCGGTGCCCG GCCGGTTCAA GGACTTCGTC
GCGATGCCGA AGTTCAACAT GTACCAGTCG CTGCACACGA CGGTGATCGG GCCGCAGGGC
AAGCCGGTCG AGCTGCAGAT CCGCACCCAC GACATGCACC GCACCGCCGA GTACGGCATC
GCCGCGCACT GGAAGTACAA GGAGAAGGCG AGGCCCGGGG GCAAGACCGG TGACGGTGGG
TCCCGGGGAG CCAAGACCGG CTCGCCCGAC GACATGCTGT GGCTGCGCCA GCTGCTGGAC
TGGCAGCGGG AGGCGCAGGA GCCCGGCGAG TTCCTGGAGA CGCTGCGCTA CGACCTCGGT
CCGCAGGAGG TCTTCGTCTT CACGCCGAAG GGCGACGTGG TGAGCCTGCC GGGCAACGCC
ACCCCGGTCG ACTTCGCCTA CGCGGTGCAC ACCGAGGTCG GTCACCGGTG CATCGGCGCC
CGCGTCAACG GCACGCTGGT CTCGCTGGAC AGCAAGCTCG GCAACGGCGA CGTCGTGGAG
ATCTTCACGT CCAAGTCACC GACCGCCGGG CCCTCGCAGG ACTGGCTGGC GTTCGTCGGC
TCGTCCCGCG CGCGGACCAA GATCCGCCAG TGGTTCACCA AGGAGCGCCG CGAGGACGCC
GTCGAGGCGG GCAAGGAGGC GCTGACCCGG GCGATGCGCA AGGCGGGCCT GCCGCTGCAG
CGGCTGCTCC GCGACGACGC GCTGGCCACC CTGGCCAAGG ACCTGCGCTA CGCCGACGTC
ACCGCGCTGT ACGCCGCGGT GGGGGAGAAC CAGATCTCCG CGTCGTCGAT CGTCGAGAAG
CTCATCGCCG CGTTGGGTGG CACCGAGGGC GCGGTCGAGG ACATCGCCGA GACGACCATC
CCGATGCGCC GCCCGGTGCA CCGCCGCTCC TCCGGCGGCG ACCCGGGCAT CGTCGTCCAC
GGCATGACCG ACGTGTGGGC CAAGCTCGCC AAGTGCTGCA CACCGGTACC CGGGGACGCC
GTCCTGGGCT TCGTGACCCG CGGCGGCGGG GTGAGCGTGC ACCGCACCGA CTGCACCAAC
GCCGCCGACC TCGAGCGCAA GCCCGAGCGC CTCGTCGAGG TGGAGTGGGC CTCGCAGCCG
GGCTCGGTGT TCCTGGTGGC CATCCAGGTG GAGGCGCTGG ACCGGCACCG GCTGCTCTCC
GACGTCACCA AGGCGCTGGC CGACGAGCGG GTGAACATCC TGTCGGCGTC GGTGCAGACC
AGCCGCGACC GCGTGGCCGT CAGCCGGTTC ACCTTCGAGC TGGCCGACCC GGCGCACCTG
GGGGCGGTGC TGCAGACGGT GCGCAACGTC GACGGCGTCT TCGACGTCGA GCGCGTCACC
GCCTGA
|
|---|
| Protein sequence | MGPDAATNVA AARPDAPALP ARDGAPALPA GDGAPALTAG DGAPALTARD GAPALPVGEG
TPALPPGADT VDGAERPPLP SRPLVRRPDD VGTEPPGEQD PQGGASRRRV RDRLARRIVA
GQRSTVVRPV LEPLAVLHRQ SHPKADLALL QRAYDVAEAA HATQKRKSGD PYITHPLAVA
TILAGLGMDT TTLVAALLHD TVEDTGQTLE SIREAFGPEV AHLVDGVTKI DRVKLGDAAQ
AETIRKMIVA MARDPRVLVI KLADRLHNMR TLRFLPPEKQ ERKARETLEI LAPLAHRLGM
NTIKWELEDL AFATLYPKRY DEIVRLVAER APSRDTYLAE VTAAVTDQLK AAGIPAVVTG
RPKHYYSIYQ KMIVRGRDFT DIWDLVGIRI LVDSVRDCYA ALGIMHAHWQ PVPGRFKDFV
AMPKFNMYQS LHTTVIGPQG KPVELQIRTH DMHRTAEYGI AAHWKYKEKA RPGGKTGDGG
SRGAKTGSPD DMLWLRQLLD WQREAQEPGE FLETLRYDLG PQEVFVFTPK GDVVSLPGNA
TPVDFAYAVH TEVGHRCIGA RVNGTLVSLD SKLGNGDVVE IFTSKSPTAG PSQDWLAFVG
SSRARTKIRQ WFTKERREDA VEAGKEALTR AMRKAGLPLQ RLLRDDALAT LAKDLRYADV
TALYAAVGEN QISASSIVEK LIAALGGTEG AVEDIAETTI PMRRPVHRRS SGGDPGIVVH
GMTDVWAKLA KCCTPVPGDA VLGFVTRGGG VSVHRTDCTN AADLERKPER LVEVEWASQP
GSVFLVAIQV EALDRHRLLS DVTKALADER VNILSASVQT SRDRVAVSRF TFELADPAHL
GAVLQTVRNV DGVFDVERVT A
|
|---|
| |