Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gobs_3079 |
Symbol | |
ID | 8754755 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geodermatophilus obscurus DSM 43160 |
Kingdom | Bacteria |
Replicon accession | NC_013757 |
Strand | - |
Start bp | 3230082 |
End bp | 3231752 |
Gene Length | 1671 bp |
Protein Length | 556 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | |
Product | alpha amylase catalytic region |
Protein accession | YP_003410060 |
Protein GI | 284991506 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.493465 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCATCA CCGACACCGC CGACCTGTGG TGGAAGAACG CCGTCGTCTA CTGCCTGGAC GTCGAGACCT ACATGGACTG GAACGGCGAC GGCTGCGGGG ACCTGCCGGG TCTGGCCCAG CGCATCGACC ACCTCGCCGA CCTCGGCGTG ACCTGCCTGT GGCTGATGCC CTTCTACCCG ACCGCCGAGC GCGACGACGG CTACGACATC ACCGACTTCT ACGGCGTCGA CCGGCGGCTG GGCACCCACG GCGACCTGGT CGAGGTCATC CGCACCGCCC AGGACCGCGG CATGCGGGTC ATCGCCGACC TGGTCGTCAA CCACACCTCG GTCGAGCACC CGTGGTTCCA GCGGGCCCGG CAGAGCCGCG ACGACCCGTT CCACGACTTC TACGTCTGGC GGGACGACGA GCCGCCGGAC ACCTCCGACC AGGTCGTCTT CCCCGACCAG GAGAAGGGTG TCTGGACGTT CAACGAGCCG ACCGGCGAGT GGTACCTGCA CAAGTTCTAC AAGGAGCAAC CCGACCTGAA CGTGGCCAAT CCGCGGGTGC GGGACGAGGT GGCCAAGGTC ATGGGCTTCT GGCTGCAGCT GGGCCTGTCC GGCTTCCGCG TCGACGCCGT CCCCTTCTTC CTGGAGACCG CCGGCACCGA CGGCGAGGCC CTCCCGGAGC CGCACGAGTA CCTGCGCGAC CTGCGCTCGG TGGTCGGCCG GCGCACCGGC GACGGCGTCC TGCTCGGCGA GGTGAACCTG CCCTACGAGC AGCAGCTGGA GTTCTTCGGC GGCACCGACG GCGACGAGCT CACCATGCAG TTCGACTTCA TCGGGATGCA GGCCCTCTAC CTGTCGCTCG CCCGCGCCGA CGCCGGACCA CTGGCCACCG CGCTGGCGGG CCGGCCGGCG CTGGACCCCG ACTCGCAATG GGCCACCTTC GTGCGCAACC ACGACGAGCT CACCCTCGAC AAGCTGACCG ACGACGAACG CCAGGAGGTG TTCGCCGCGT TCGGGCCTGA GGAGCGCATG CAGGTCTACG GCCGCGGCCT GCGCCGCCGG CTGCCGCCGA TGCTGGACGG CGACCCGCGA CGGGTCCGGA TGGTCTACAG CCTGCTGTTC TCCCTGCCCG GCACCCCGGT GCTCTTCTAC GGCGAGGAGA TCGGCATGGG GGAGGACCTC GACGCCGAGG GGCGGCTGGC CGTCCGGACG CCGATGCAGT GGACGTCGGG CCGCAACGGC GGTTTCTCCA CCGCCGACCC CGACCGGCTG CCCGGTCCGG TGGTCGACGG CGGGTTCGCC CCGGAGTTCG TCAACGTGGC CGACCAGCGC CGCGACGAGG ACTCGCTGCT GTCGTTCACC AAGCTGCTCA TCCGCCGCTA CCGTGAGTCG CCGGAGCTGG GCTGGGGCGG GTTCGAGCTG CTCGAGCAGC CGCACCGCGA GGTGCTGGCC CACCTGTGCA GCTGGGACGA CGGCGCGCTG GTCGCCGTCC ACAACCTCGG CCCCGAGCCG CGCACCGTGC CGCTGATGCT CCCGGGCTGC GACGCCGGGC ACCGCCTGGA GGACCTGCTG GTCACCCAGA CCACGCCGGT CGGCGAGGAC GGCGGGGTCG AGCTGACCCT CGACGGCTAC GGGTACCGCT GGCTGCGCGT CGTCGGGCCG GACGACCGCC GGCTGGTCTG A
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Protein sequence | MRITDTADLW WKNAVVYCLD VETYMDWNGD GCGDLPGLAQ RIDHLADLGV TCLWLMPFYP TAERDDGYDI TDFYGVDRRL GTHGDLVEVI RTAQDRGMRV IADLVVNHTS VEHPWFQRAR QSRDDPFHDF YVWRDDEPPD TSDQVVFPDQ EKGVWTFNEP TGEWYLHKFY KEQPDLNVAN PRVRDEVAKV MGFWLQLGLS GFRVDAVPFF LETAGTDGEA LPEPHEYLRD LRSVVGRRTG DGVLLGEVNL PYEQQLEFFG GTDGDELTMQ FDFIGMQALY LSLARADAGP LATALAGRPA LDPDSQWATF VRNHDELTLD KLTDDERQEV FAAFGPEERM QVYGRGLRRR LPPMLDGDPR RVRMVYSLLF SLPGTPVLFY GEEIGMGEDL DAEGRLAVRT PMQWTSGRNG GFSTADPDRL PGPVVDGGFA PEFVNVADQR RDEDSLLSFT KLLIRRYRES PELGWGGFEL LEQPHREVLA HLCSWDDGAL VAVHNLGPEP RTVPLMLPGC DAGHRLEDLL VTQTTPVGED GGVELTLDGY GYRWLRVVGP DDRRLV
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