Gene Gobs_0689 details

Gene Information

• Locus tag: Gobs_0689
• ID: 8752346
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geodermatophilus obscurus DSM 43160
• Kingdom: Bacteria
• Replicon accession: NC_013757
• Strand: +
• Start bp: 731196
• End bp: 733106
• Gene Length: 1911 bp
• Protein Length: 636 aa
• Translation table: 11
• GC content: 77%
• Product: Type IV secretory pathway VirD4 protein-like protein
• Protein accession: YP_003407837
• Protein GI: 284989283

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.01424
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGTCG GTCGGTCCCA GCCCGACGTC GGCCCCACCG GCTGGGAGGT GCCCACCGCC 
GTCGCTCTAG TGTGGATGAC CGCCGGCGCG CTGCTGCTGC CCGCCGGCCG CGCCGCCGCG 
GCACTGCTGA CCGGCGGCGG CTGGGTGTGG CCGCACGGGT CGGCCGCACT GGTCGCCTCC 
GTCGGCGGGC TGCTCGCCGG CGACCCCGCC GCCGGCCTGG ACGGCGTACA AGTAGCGGCG 
CTGCCCTCGT CGCCAGTCAT GTACGCCGTC ATCGCAGGAG CGCTCGGACT GTTCCTGGCC 
GGCAGTGGGG GAGCGGCCTG GGCCGCGCGC CGGCTGCTGG GCGGGCGGTC CGGGATGGCC 
TCCCGTGCCC ACGTCGCCGA CGTCCTCGGC CGCGCGCGGC TGCGCCAGGT CGCTCCCGTC 
GTCCGCCCCG ACCTGACTCC GGATCGCCGG CGCGAGGACC GTCGCTTCAC GGGCACCGAT 
GTGGGGTGGC GACTGGGCCG CGCCGCCGTC CCCGCCGCCG GAGAACTGTG GGTGCCCTAC 
GACCGCACCA CCGGCGTCTA CGGCCCCCAG GGCTCCGGCA AGACCCTCGA CCTACTCGCC 
CCCGCGCTGC TCGACGCGCC GGGGGCGGCG CTGGTGACGC TGACCAAGGC CGAGGACCTG 
CTGCTCACCC TCGACGCCCG CGCCGACGGC GACCGGCCGG TCGCCGTGCT CGACCCGTTC 
GGCGCCGTCC CCGGCCTGGC GGAGCTGGTG TGGGACCCGG TCGCTGGATG CGCGGACCCG 
ATGGTCGCCG AGCGCCGAGC CAAGGCGTTT ACCGCCGGCA CGGTTGCCGG CGCGGTCACC 
GGCGGCGTCG CCAGCAGCGC GGCCCGGTTC TACGCGTTCG AGGCGGCCAA GGTGCTGCAG 
GCGTTCCTGC ACGCCGCGGC GCTGATCGAC GGCACCGTCG AGGACGTCCT CACGTGGGCC 
GCCCACCCGC AGGCGGCGAC GCAGCCGGCC GACGTCCTGC GCGGCCACCC CGATGCCGCG 
CCGTTCTGGG ACGGGCTGCT GCACGGCGCC CTGCACGGTG ACCCGCGCGC TGCGGGCAAC 
ACCGCCACCA CCGTGCAGCA GGCGCTGGCG CTGTTCTTCC AGGCCGACAT CCGCCGCCGC 
TGCACCCCGG GGCCTGGGCG GCCGGCGACC GACATCGCCG ACCTGCTCGC CGCCGGCGGC 
ACGATCTACC TGCTCGGCCG CGAGGACCCC TACGCTTCGG CGTCCCCGCT GATGACCGCG 
GTGGCCGAGC ACGTCCTCGA CACCGCCCTG CAGCTGGCCG CCACGGCGCC GACCGGGCGG 
CTGTGCCCGC CGCTGCTGGC CTGCCTGGAC GAGCTGCCCT CCACCGCGCC GCTGCCCACC 
CTGCGCACCC GAATGGCCAA CGACCGCGCC CTGGGTGTCA GCTTCCTCTA CGCCGCGCAG 
ACCTGGCGGC AGCTGGTGTG CGTCTACGGC GAGGACGAGG CCCGCACCCT GTTCGGGCTG 
ACCAACGTCG TCGTCGCCTT CGGCGGCGGC AAGGACGGCG CCTTCTACCG CGAGCTGTCC 
GACCTGCTCG GCACCACCCG GGTGCGGCGC ACCTCCTACA GCTACCGCGG TGCGGGGTGG 
TCCCGGTCCA CCCACGGGGA GACCGTGCAG GTGCTGCGCG GTGAGGAGAT CCGCCAGCTG 
CCGCCGGGCC GGGCGCTGGT CGTCGCCGAG AACGCCCCGC CGCTGATCGC CCGGCTCACC 
CGCTGCCTCA CCGGACCCCG CGGCCTGCAA CTGCTGGCAG CCCAGGGCGC CGCCCGCGCC 
CGGGTCACCG CCGCCCGCGC CGGTGACCCG CCCCGGGCCG AGTGCACCGG AGCCGCTCAC 
TACAGCGCGC GGCCCGCAGG CCCGGCACCG GCCCAGAGGA GCGCCCGGTG A 

 

Protein sequence

MSVGRSQPDV GPTGWEVPTA VALVWMTAGA LLLPAGRAAA ALLTGGGWVW PHGSAALVAS 
VGGLLAGDPA AGLDGVQVAA LPSSPVMYAV IAGALGLFLA GSGGAAWAAR RLLGGRSGMA 
SRAHVADVLG RARLRQVAPV VRPDLTPDRR REDRRFTGTD VGWRLGRAAV PAAGELWVPY 
DRTTGVYGPQ GSGKTLDLLA PALLDAPGAA LVTLTKAEDL LLTLDARADG DRPVAVLDPF 
GAVPGLAELV WDPVAGCADP MVAERRAKAF TAGTVAGAVT GGVASSAARF YAFEAAKVLQ 
AFLHAAALID GTVEDVLTWA AHPQAATQPA DVLRGHPDAA PFWDGLLHGA LHGDPRAAGN 
TATTVQQALA LFFQADIRRR CTPGPGRPAT DIADLLAAGG TIYLLGREDP YASASPLMTA 
VAEHVLDTAL QLAATAPTGR LCPPLLACLD ELPSTAPLPT LRTRMANDRA LGVSFLYAAQ 
TWRQLVCVYG EDEARTLFGL TNVVVAFGGG KDGAFYRELS DLLGTTRVRR TSYSYRGAGW 
SRSTHGETVQ VLRGEEIRQL PPGRALVVAE NAPPLIARLT RCLTGPRGLQ LLAAQGAARA 
RVTAARAGDP PRAECTGAAH YSARPAGPAP AQRSAR