| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_6797 |
|---|
| Symbol | |
|---|
| ID | 8716057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013731 |
|---|
| Strand | - |
|---|
| Start bp | 159553 |
|---|
| End bp | 160929 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | |
|---|
| Product | Carbohydrate-selective porin OprB |
|---|
| Protein accession | YP_003391546 |
|---|
| Protein GI | 284005726 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAT CGCTTCCTAT TGCCTTGGCC TGGCTCCTGT ATTTTCCACC TACTGTTGCG
CAGACGCTCA AACCAGATTC CTTAAATCGA TTTGTCATCA ATTTTCAATT GACGGGAATT
TCACAAAGTC ACCCTGCCTT CAACGCGCCT TATGGGGGTC AGAATAGTCA GATTAGTGAG
GCTACCGAAG CCTTCTCGGT TACCTCAACC CTGTTCATCG GGTATCGACT TTGGCGGGGG
GGTGCTTTGT ATGTTAACCC CGAAATGGCG GGGGGGCGAG GGGTTGGCAA AACATTAGGC
ATTGCTGGCT TTCCCAACGG GGAAACGTTC CGAATTGGTA ATCCTGAACC CGTACCGTAT
CTGGCACGCG CTTTTTTCCG GCAACATTTT TCGCTTCGGG GGCGGGGCGA TCAGGCTAGG
ACACCGACTC AATTTAAAGG TGCGTCGCTA AATCAGGTAG CGGAATATGT ACCCGATCAC
CGATTTACGC TGACGGTTGG TAAGTTTTCA CTGGCCGATG TATTTGATGG CAATAGTTAC
AGCCATGATC CCCGTAGTCA ATTCATGAAT TGGGCCCTGA TGAGTAACGG AGCCTGGGAT
TATCCGGCCA ATACACGCGG TTACACGCTG GGCATAATTG GCGAACTGGT TACACCCCGG
ATAGCCCTTC GTGCGTCGGG AGCGCTGGTT CCTCAGATTG CTAATTTAAG CCAGTTAGAT
TTTAATGTCA GTAAAGTGAA CGGCTTCGTC CTTGAAGTGG AAAAGCCAGT CCTGGTTTTT
AAGCGCAAAG GCATAATCCG GTTACTGGTC TTTAACAACA AAACCAGAGG TGGTGTGTAT
AAAACGGCCA TTGATAAATG GGTGGCTAGT GGGTATACCG ACTCCCTATC GGTCAACGTG
AGTGACCCCA GAGATGCTCA GGGAGCCTAT ATTTACAACG GAGCCACCAA GTACGGGGTT
GGAATAAATA CCGAATTAGC CCTGTCAAAA GACGTAGGGA TTTTTGCTAA ATATAGTTGG
AATGATGGCA GGTCTGCCAG TTGGGTCTTT GCCGAAATTG ATCGCTCCCT GAATGGAGGG
ATTAGTATTA AGGGAGCTAG GTGGAAGCGG GGCAATGACG TGTTTGGGGC GGGTCTGGTT
ATCAATGGTC TATCACCCGA CCACCGAGAT TTTCTGAGTG TGGGGGGGTA CGGGTTCATG
ATTGGTGACG GAAAATTAAC CTATGGCACG GAAAACATTT TTGAAACCTA CTACAAAGCC
ACGATTAATT CGTCGTTACA CCTAAGCCTG AATTATCAAT TGATTCAAAA TCCCGCGTAT
AACAAAGATC GAGGACCAAT CCAACTTTGG GCCTTACGGG TGCATGTAGA TTATTAA
|
|---|
| Protein sequence | MSKSLPIALA WLLYFPPTVA QTLKPDSLNR FVINFQLTGI SQSHPAFNAP YGGQNSQISE
ATEAFSVTST LFIGYRLWRG GALYVNPEMA GGRGVGKTLG IAGFPNGETF RIGNPEPVPY
LARAFFRQHF SLRGRGDQAR TPTQFKGASL NQVAEYVPDH RFTLTVGKFS LADVFDGNSY
SHDPRSQFMN WALMSNGAWD YPANTRGYTL GIIGELVTPR IALRASGALV PQIANLSQLD
FNVSKVNGFV LEVEKPVLVF KRKGIIRLLV FNNKTRGGVY KTAIDKWVAS GYTDSLSVNV
SDPRDAQGAY IYNGATKYGV GINTELALSK DVGIFAKYSW NDGRSASWVF AEIDRSLNGG
ISIKGARWKR GNDVFGAGLV INGLSPDHRD FLSVGGYGFM IGDGKLTYGT ENIFETYYKA
TINSSLHLSL NYQLIQNPAY NKDRGPIQLW ALRVHVDY
|
|---|
| |