Gene Slin_6567 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_6567 
Symbol 
ID8730353 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp7969686 
End bp7973153 
Gene Length3468 bp 
Protein Length1155 aa 
Translation table11 
GC content55% 
IMG OID 
ProductTonB-dependent receptor plug 
Protein accessionYP_003391323 
Protein GI284041393 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAC CAATACCAGT TCAAACCCTG CTTTATTATA TGAAACTCTC GGTGGTACAG 
GTGTGTCTGG CCATAACGTT CACGGGTGTT TCGCTGGCAC TCGATGTTAC AGCTCAGGAG
ATATTGACGA AACGGGTAAG CTTCCGGCTG GAAAATCAGG GCTTACGCAA GGTGTTTAAG
GAAATCGAAC AGCAAACCAA CATTCGATTC GCCTTTCGGT CGCAGGTGAT TCCCTTCGAT
CAGAAAACGA CCGTCATCGC GTCGAACGAA CCACTGGGTG ATGTGCTGAA CAAGGTGGTT
AAACCGCTCC GGCTCCGCTA CGAAGTGGTA GGCCGTCAGA TCATCATCAG CCCTGTTTCC
CAACCGGCCC AGCCGGAGGC TTCGCTGCAA CGTATCAACG GACGTACGGA TTTGTTGGCT
GCGGCTGAGC AGACCATTAC GGGCACCGTA TCGGACGAAG CGGGCGTAAC CCTGCCGGGG
GTAAGTGTGG TCATAAAAGG CACCACCCGC GGCACCTCCA CGGATGCCGA TGGCGCGTTT
CGGCTCGTTG TGCCCGATGC CCAGGCAGTA CTGGTGTTTT CCTACGTTGG CTACGAGCCG
CAGGAGGTGG GCGTTAGCAA CCAGACTTCT TTCAAAATCA CCTTGAAAGC CGATAGCAAA
TCCCTCAACG AGGTGGTGGT CGTCGGCTAT GGTACGCAGA AAAAAGCCGA CCTCACCGGC
GCTATCGCGA CCATATCGGC AGAGAAGCTA AAGAGCCGGC CCGCCGTGTC TTATGGCGAA
GCGCTGGTGG GCCAAATGGC CGGGGTACAG GTGCAGCAAA CCAACGGCGC TCCCGGTGGC
GAAGGGCTAA CGATTCGGGT GCGGGGTACA GGCTCTATTT CGGCTACCAG CTCGCCCCTT
TATGTGATCG ACGGCTACCC GATTGACGGC AACGCGTTTT CGCTCGTAAA TCCGTCGGAT
GTTGAAAGTA TTCAGGTGCT GAAAGATGCT TCGTCCACGG CCATTTACGG CTCGCGCGGG
GCCAATGGTG TCGTGATCGT GACCACCAAG AAAGGGAGCG TTGGCACACC AACCATTTCT
TACAATGCCT TTTACGGCAT TCAGCAGGTG GCGAAGAAAA TGAACGTCAT GAATACCCGC
GAATACCTCC AGTTTTTCAA GGACGGTCAT AATCAGGCCT GGCTGGACCG GGCACCCATG
CCCGGCGACG CACCCCACAC CATCAATGAC CCGAATTCTA TCCGGGAAAA ATATACCAAC
TCCAGCTTCT ACGTTATTCC CGAAAGCTTT AACGATCCCA ACAACTTTGC GGACATCAAC
TGGCAGGACC AGATTTTCCG GACAGCACCT ACCCAGCGGC ACGAGCTATC CGTAACGGGG
GGCGTCGACA AAACGCGGTA TGCCGTGTCG GGTGGCTACA CCAACCAGCA GGGTATTCAG
ATCAACAGCG ACTACAAACG GTATAATCTG CGCACCAACC TCACCTCCAA CCTGAGCAAA
AAGCTGGAAG TGGGGGTGTC CATCAGCGGT TATTATTCGG AAAACAACAA TGTAGACAAC
GGCAAAGACA GCCCCTTGTC CTACTCCGTC TACCTGCCCC CGATTTATCC CCTTCGCAAC
CCCGATGGCA CGTACGGCTC GCAGGTACGC AACCCGGAAA TCTGGGCGGG CGACGTAGCC
AACCCGGTTG GTATCGCTTC CGCTATTACG AACTACACCA GCCGCAACGG CTTCATTGCG
TCGGCCTACG GTCAATACGA AATCATCGAC GGCCTGCGGT ACCGGATAAG CCTGAATGGC
ACCATGGAGA ACCGGCGGCT GAAATACTAC CGTCCTTCGT ATGTGGATCT AGACGGCTCG
CGGGCACCCC GAACGGCCGA CGCCCGCAAT GAAACCTGGC TCGACCGCAA CTGGCTGATC
GAACACACGC TGAATTATAC CAGAACCCTG TTTACTAAAC ACAGCATCAA TCTGCTGGCG
GGCTACACGG CCCAAAAGTC GTATGGCGAA TATGCGCGGG TCAATGCCCA GAACTTTCCC
AACGATGTGG TGCGTACGCT GAGCGCGGGT CAGATCGTGG GCGGGACCAA TACGGAATAC
CAGAACTCAC TGATTTCCTA TCTGGGCCGC TTCAACTATG CCTACGACGA TAAGTACCTG
CTGACGGCCA GCATACGAAC CGACGGCTCG TCCCGCTTCG GGTCCAACAA CAAATGGGGT
ACGTTCCCGT CGGTTTCGGC AGGGTGGCGG GTGAGCGGGG AGTCGTTCAT GCGCGACGTT
CGCCCCATCA GCGACCTGAA AATTCGGGCT AGCTGGGGTC TGGTGGGTAA CAACCGCATC
GGCGATTACG ACGCCATTGC CCGCACCGGC AACAGTTATA ACGTCCTTAA TAATACGCTG
GTCAATTCGG TCGATCCGAT CAACTACCCC AACCCCGACC TCGGCTGGGA GAAAACCCGG
CAGTGGAACA TCGGTTTTGA CTTGGGGCTG CTCAACGAAC GCATCCGGCT CGAAGCCGAC
TTCTACAACA GCCGCTCCGT CGACCTGTTG CTCAGCGTTC CGGTTCCTAC GCTGACCGGC
TACGCCACCC AGTTGCAGAA CATCGGCCAA CTGGAAAACA AGGGCATGGA ATACATGGTC
CGGTCGCGCA ACCTGGTTGG CGCGTTCAAA TGGTCGACGG ATGCTAATAT CTCTTTCAAC
AAGAATAAGG TACTGGCACT CGGTCCCGAC AAACGGCCTA TTTATGCCGG AGCAGCCAAT
GCGGGCAATA CCTTTATTAC GACCATCGGG CAGCCCATTG CCACGTTTTT CGGCTATAAG
TACGACGGTA TTTTCAAAAA TCAGGCCGAG CTGGATGCGG CTCCGCACCT GGCCAACGAC
CACCCCGGCG ACCCACGGTA TGTCGATACA AACAAAGACG GGGTTATCAA TGCCGACGAT
AAAACCTTTC TGGGAAACAA CCAGCCCAAT TTCATCTTTG GCTTTAGCAA TGATTTTTCC
TACAAAGGCT TCGACCTCAA CCTCCAGCTG ACCGGTTCGC AGGGGGCCAA ACTGTTCAGC
TTCTTTAACC GGATGGTGGG GATTTATCAT GGCGACCGCA ATGGGCTTGT TAAGTTAAAT
GACCGCTGGC GTTCGGAAAC AGAGCCCGGC TCGGGCGATA TTCTGCGGGC CAACCGTGAT
CCCAAAGGGC TGCAAAAAGA ACCGTCGAGC TACTGGGTGG AAGATGGCTC GTTTGTACGC
ATCCGGAATG TATCCCTCGG CTATAATTTT AACAGTACCC TCCTCAAGCA GCTGCGGCTC
AAAGGACTGC GTGTTTACGT AACGGGGCAG AATCTGTACA CCTTCACGAA GTATCCCGGT
TTCGATCCGG AAACGAGCAG CGAAGGCGGC AGTCTGTCGC GCGGGGGGGA CTACCTGGGG
TATCCGTCGG CCCGTACCCT CATTGCTGGT CTTAACGTAA CGTTCTAA
 
Protein sequence
MKKPIPVQTL LYYMKLSVVQ VCLAITFTGV SLALDVTAQE ILTKRVSFRL ENQGLRKVFK 
EIEQQTNIRF AFRSQVIPFD QKTTVIASNE PLGDVLNKVV KPLRLRYEVV GRQIIISPVS
QPAQPEASLQ RINGRTDLLA AAEQTITGTV SDEAGVTLPG VSVVIKGTTR GTSTDADGAF
RLVVPDAQAV LVFSYVGYEP QEVGVSNQTS FKITLKADSK SLNEVVVVGY GTQKKADLTG
AIATISAEKL KSRPAVSYGE ALVGQMAGVQ VQQTNGAPGG EGLTIRVRGT GSISATSSPL
YVIDGYPIDG NAFSLVNPSD VESIQVLKDA SSTAIYGSRG ANGVVIVTTK KGSVGTPTIS
YNAFYGIQQV AKKMNVMNTR EYLQFFKDGH NQAWLDRAPM PGDAPHTIND PNSIREKYTN
SSFYVIPESF NDPNNFADIN WQDQIFRTAP TQRHELSVTG GVDKTRYAVS GGYTNQQGIQ
INSDYKRYNL RTNLTSNLSK KLEVGVSISG YYSENNNVDN GKDSPLSYSV YLPPIYPLRN
PDGTYGSQVR NPEIWAGDVA NPVGIASAIT NYTSRNGFIA SAYGQYEIID GLRYRISLNG
TMENRRLKYY RPSYVDLDGS RAPRTADARN ETWLDRNWLI EHTLNYTRTL FTKHSINLLA
GYTAQKSYGE YARVNAQNFP NDVVRTLSAG QIVGGTNTEY QNSLISYLGR FNYAYDDKYL
LTASIRTDGS SRFGSNNKWG TFPSVSAGWR VSGESFMRDV RPISDLKIRA SWGLVGNNRI
GDYDAIARTG NSYNVLNNTL VNSVDPINYP NPDLGWEKTR QWNIGFDLGL LNERIRLEAD
FYNSRSVDLL LSVPVPTLTG YATQLQNIGQ LENKGMEYMV RSRNLVGAFK WSTDANISFN
KNKVLALGPD KRPIYAGAAN AGNTFITTIG QPIATFFGYK YDGIFKNQAE LDAAPHLAND
HPGDPRYVDT NKDGVINADD KTFLGNNQPN FIFGFSNDFS YKGFDLNLQL TGSQGAKLFS
FFNRMVGIYH GDRNGLVKLN DRWRSETEPG SGDILRANRD PKGLQKEPSS YWVEDGSFVR
IRNVSLGYNF NSTLLKQLRL KGLRVYVTGQ NLYTFTKYPG FDPETSSEGG SLSRGGDYLG
YPSARTLIAG LNVTF