Gene Slin_6563 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_6563 
Symbol 
ID8730349 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp7965064 
End bp7966773 
Gene Length1710 bp 
Protein Length569 aa 
Translation table11 
GC content57% 
IMG OID 
Productglucose-methanol-choline oxidoreductase 
Protein accessionYP_003391319 
Protein GI284041389 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0955213 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACCTTA CAATCGACGC AAAAAAAGAA ATGACCTACG ACGCCATCGT GATTGGGTCG 
GGGGTTAGCG GAGGCTGGGC CGCTAAAGAA CTAACCGAGA AAGGATTACG GGTACTTATG
CTCGAACGAG GTCGCCCGCT GGAGCACGTA ACGGGTTACG AAGATGCTCT GAAAGGGCCC
TGGCAAATGC CCGAAACGAG CCGCCTGGGC GATCTGGCAC CCCGCTACCC GCAGGCACCG
CAGGACTCGA CCCTGGCCAA AAGTGCCCAG AGTTACTGGA TGCCCGGTGC GGATACCTCC
TACCGGCAGG ATAAACCCTT CCGCTGGCTG AGACCCGGTA TCGTGGGCGG GAAATCTATC
ATGTGGGGGC GGCAGTCGTA CCGATTCAGC GATATTGACT TTGACGCCAA TGCCCGCGAA
GGCGTTGGCG TCGATTGGCC CATCCGCTAC AAAGACATTG CCCCCTGGTA TTCGTACGTC
GAGAAGATAG CCGGTATCTC GGGCGAAAAG TTAGGCTTAC CGCAGCTGCC CGATAGCGAG
TTCCTGCCGC CTATGGACAT GTTTCTGGTC GAAAAAGAAG TGCGAAAACG GATCGAGAAA
AACTTTCCGG GGCGGATCAT GACCATTGGC CGAACTGCTA ATCTATCCGA AGCCCGGAAA
ATACAGATGG ACAGTGGCCG GGCCTCCTGC CAGTACCGCA ACCAGTGCAT ACGCGGGTGT
CCTTACGGTG GTTATTTTAG TACTCAATCC TGTACGCTGC CCCCGGCGGT GAAAACCGGC
CGACTGACAC TGCGTCCGCA TTCGGTAGTA ACCGAGATCA TGCACGACGC GCAAAAACAG
CGGGCAACAG GCGTGCGGGT AGTCGACTCC GAAACGCTGG AACACCGCGA GTATTTTGCC
AAAGTCATCT TCGTTTGTGC CAGTGCCATG GCTTCTACGG CCCTGCTTAT GAACTCGGTA
TCGGATCGCT ATCCCAATGG CATGGGGAAC GACTCGGGGC AGTTGGGGCA CAATCTGATG
GACCACCACT TCCGGATTGG CGCTTCGGGC GTGTGGGAAG GCGGTGAAGA CCGGTATTTT
TACGGCCGAC GGGCCAACGG TATCTACATT CCCCGTTACC GAAACATCGG AACCGACAAA
CGCGACTACC TGCGTGGCTT CGGCTATCAG GGCGGAGGTG GGCGACAAGG TTGGCAACGC
AGCGTTGCCG AACTATCTTT CGGTGCATCG CTGAAAGAAG AACTGACCCA CCCCGGCCTA
TGGACGATGG GGCTGATCGG GTTTGGCGAG CAACTGCCCG AATACCGAAA CCGCATGTAT
CTGGACAAAA CCCAGTTGGA TAAGTGGGGC ATGCCAACGG TGGCTTTCGA CGCCGAGATC
GGCGAAAACG AGCGAAAAAT GCGCATCGAC ATGCTCAACG ACGCGCAGGA AATGCTGCAA
TCGGCGGGGA TAAGCAACGT AAAAGGCTAT GATCAGGGGT CGGTTGTGGG CGGGGCCGTT
CACGAAATGG GCACCGCCCG GATGGGCCGC GATCCCAAAA CCTCCGTGCT TAACGCCCAC
AATCAGATTC ATACCGTCAA GAACGTATTT GTCCCCGATG GTGCCTGCAT GACCTCGTCG
GGCTGCGTCA ATCCGTCGTT GACGTACATG GCCCTATCGG CACGCGCTGC CGACTTTGCC
GTTCGGGAGT TAAAAGCCCG CCGACTTTAA
 
Protein sequence
MHLTIDAKKE MTYDAIVIGS GVSGGWAAKE LTEKGLRVLM LERGRPLEHV TGYEDALKGP 
WQMPETSRLG DLAPRYPQAP QDSTLAKSAQ SYWMPGADTS YRQDKPFRWL RPGIVGGKSI
MWGRQSYRFS DIDFDANARE GVGVDWPIRY KDIAPWYSYV EKIAGISGEK LGLPQLPDSE
FLPPMDMFLV EKEVRKRIEK NFPGRIMTIG RTANLSEARK IQMDSGRASC QYRNQCIRGC
PYGGYFSTQS CTLPPAVKTG RLTLRPHSVV TEIMHDAQKQ RATGVRVVDS ETLEHREYFA
KVIFVCASAM ASTALLMNSV SDRYPNGMGN DSGQLGHNLM DHHFRIGASG VWEGGEDRYF
YGRRANGIYI PRYRNIGTDK RDYLRGFGYQ GGGGRQGWQR SVAELSFGAS LKEELTHPGL
WTMGLIGFGE QLPEYRNRMY LDKTQLDKWG MPTVAFDAEI GENERKMRID MLNDAQEMLQ
SAGISNVKGY DQGSVVGGAV HEMGTARMGR DPKTSVLNAH NQIHTVKNVF VPDGACMTSS
GCVNPSLTYM ALSARAADFA VRELKARRL