| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_6424 |
|---|
| Symbol | |
|---|
| ID | 8730208 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 7784843 |
|---|
| End bp | 7785595 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | |
|---|
| Product | two component transcriptional regulator, LytTR family |
|---|
| Protein accession | YP_003391180 |
|---|
| Protein GI | 284041250 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.529726 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGACA CTGAATCAAC GGTACGTTAT AGTACCTTAT TGGTCGAAGA TGATCCTGCT
TTTATTGAAC AGTTGAGTCG TTATATTAAT CAGGTCAAAT TCCTCGCCCC ACCACTCATA
TGCCACACGG GTGTCGATGC CTTGAAAGTT CTGGCAACCA ACCCAATCGA TATCCTGTTT
CTGGACCTTA CCCTGCCCGA CATGAATGGG CTGGACTTAC TAAGAGCCTC CCGAAATACG
TCGGCCGTTG TTGTTACGTC GGCTTACAGT GAACTAGCCA TCGAGTGCTT TGATTTCGAT
ATCATTGACT TCTTACCCAA GCCTTACGAC TTCAACCGGT TTCTGCGGGG TGTGGGCCGT
GTTCTTGAGC GTATCCAGGC AGCAGCCGTT ACCGAAGGAA AGCCGGCAGC CACACCCGAC
AAAGAAGAAA TATATTTTAA ATCTGGACGG CGATTAGAGC GATTCGCCTT TAGTGATATT
CTATACATAG AAGCGTATGG ACTTTACATT AAAGTCCATA CGCTGGATGG AGTCTTTGCG
GTTAATAAAC GCATATCTGC GCTGTCTGAT GATCTGCCAA ACGACCGTTT CATTCGTATT
CATAAATCGT ATATCATCAA CGTTACCCAC CTGAAACGCC TGGAATCAAA AGCAGTCTGG
ATCAAAACTA CTAAGATTCC CATTGGTATT ACCTATCAGC CTACGGTACA GGAGCAAATG
CAAAAGCTTG GCATTAGCGC CAAGTCAAAC TAA
|
|---|
| Protein sequence | MNDTESTVRY STLLVEDDPA FIEQLSRYIN QVKFLAPPLI CHTGVDALKV LATNPIDILF
LDLTLPDMNG LDLLRASRNT SAVVVTSAYS ELAIECFDFD IIDFLPKPYD FNRFLRGVGR
VLERIQAAAV TEGKPAATPD KEEIYFKSGR RLERFAFSDI LYIEAYGLYI KVHTLDGVFA
VNKRISALSD DLPNDRFIRI HKSYIINVTH LKRLESKAVW IKTTKIPIGI TYQPTVQEQM
QKLGISAKSN
|
|---|
| |