| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_6395 |
|---|
| Symbol | |
|---|
| ID | 8730179 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 7749267 |
|---|
| End bp | 7749935 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_003391152 |
|---|
| Protein GI | 284041222 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.264791 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAAA TTAGAAGAAA TCGCGCGGAC ACCACACAGC GTATTGTTAA CGCACTTGAA
GATGTACTGG CTGAGCAAGG TCTTGAAGGT GCCAGAATTA ACCAGATAGC TGAGAAGGCT
GGGATTAGCA AAGTGCTTAT CTATCGCTAT TTCGGCGGCC TAGATGGGTT AATGGAATAC
TACGTCCGGA TGGGTCGAAT GTTTCCGCAT TTCACTCCGG CCATGCTGGA CCAGATTCGT
CCTATACACC AGGATGATCT GGCGAAGGTT TGGTACCGGC AGGCGATTCA GATGTTTCGT
TACATGCGTA CATCGAAAGC CGCTCGCGAA GTATTAAAGG CAAACGTTGT TGAAAATGAT
CCAACGGCTG ATGTCATCAG TAAAGCACAG GATGATGAAC TCCAGCGGTT AGTTAACCAG
CTTTCGTTTA TTGAAGGGCC TGACAGCCAG GCGATTTCGG CCGTTATGCT CGGGGCTTTA
TCTTACCTGA CGATCCAGGC GCAAAACAAC CATACCATGG TCGGTATTGA TCTGCGTAGT
GAACAGGGAT GGCAACGTAT TGAAGGAGCA GTTAAGCTAA TTTATCTGGC ACTTAATAAA
ATGGCGATTG ACACCCAATC TGTGAAGTTA AGCGCTCAAG CTAAAGCCCA GCCTGCTAGC
CAATGGTAG
|
|---|
| Protein sequence | MEKIRRNRAD TTQRIVNALE DVLAEQGLEG ARINQIAEKA GISKVLIYRY FGGLDGLMEY
YVRMGRMFPH FTPAMLDQIR PIHQDDLAKV WYRQAIQMFR YMRTSKAARE VLKANVVEND
PTADVISKAQ DDELQRLVNQ LSFIEGPDSQ AISAVMLGAL SYLTIQAQNN HTMVGIDLRS
EQGWQRIEGA VKLIYLALNK MAIDTQSVKL SAQAKAQPAS QW
|
|---|
| |