| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_6290 |
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| Symbol | |
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| ID | 8730074 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Spirosoma linguale DSM 74 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013730 |
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| Strand | + |
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| Start bp | 7632109 |
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| End bp | 7635888 |
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| Gene Length | 3780 bp |
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| Protein Length | 1259 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | |
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| Product | Ricin B lectin |
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| Protein accession | YP_003391048 |
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| Protein GI | 284041118 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.0798248 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATTGC TATGCTTTAG TTTACCTAAG CGGGTAGTTG CTCAAACAAA ACGTGTTGTT
TCATTCTCAT TTAATCTGGC GGCTGATGCA CGCACCAGCG CAGGTGTATT TGCAAAGGAT
GGTACACTAA TTCGAACCTT GTGGAGCGGA GTTAGTTTGT CGGCAGGCTC GCATTCAAGG
AACTGGGATG GCCTTAACGA TGATGGTCAG ACGGCCGCTA CGGACAGCTA CGATATTCGG
GTATTATCGA ACAACGTAAA CTACACCTGG GAGGGTGTAA TTGGTAACTC TTCGTATGGT
ATTAGCCAGA ATAACAATGT TCAGCGGGCT TTTCTGCGAA TGCAGAGTTT AGCCATCAGT
GGTACGAACG CTTATTATGG CGTAGGGTAC GCTGAAGGAC ATCCCTCTCA GGCTAAGTTC
GTTGTGGGCA GTCCGCAGTC ACGGATCGAA TTTTCGCCGA AAGGCGAGAC GGCACAGGCT
ACGCTGTTTA CGGCTACCGA TGGAACCACC GTTTACTGGG CGGGCTATGA TGGCTACAGC
AATGGTAATA ACTGGTTTAT CTTCGGTACA AAAACGAGCG ATAATACCGA ACAGATTTTC
CCTAACGGGC AGTCGTTGCG AATGACACTC GGCAAAACGT ATGCCTCCTG TTTAGATGTA
CTTCCGCAAT CGGATGGCAC CGTTACGGGC CTTGCCGTTC AGAAAAACGG CAACTACCTG
TTCGTATCAC ATAAAGCCCT TCACCAGCTT CGGGTCTATA ACAAGACAAC CGGTGCGCTG
GCTCAAACAC TGGCCTTCAA CGATGCGGCC GGGCTGGCCG TAGACGGGCA GGACCGGCTG
TGGGTTATCA ATGGGACGAC CGTCCGTAAA TATGCCGTAC AGGCAGATGG TAACCTTCTT
GATGCCGGTA TGGCTCTTGC TGGTCTGGAA CGGCCGATGG CGCTGGCCGT CTCGCCCGAC
AACGGCACCG TGCTCGTGGC CGATGGCGGA GGAAGCCAGC AGCTAAAAGC GTACAGTAAT
GTAGCCGGAA TGCCGCTATG GACGTTTGGC CAACGGGGCG GCTACATGAC CGACCCCACG
GTGAGCAATG ACAAGTTCTA CTTCTCGGAT GTGAGCGGGG TGATCAACGA TACGTTTCTG
GCCTTTCAGG CTGATGGGTC GTTCTGGGTG GGCGATTCGG GCAACTACCG GGCGCAGCAC
TATTCGGCCA GCCGCACCTT CATCGATCGA ATTCAGTACA TGCAGAACAA CTACAGTTGC
TATGTGGACC AGAATAACCC CAGCCGGGTG TTTGCCCAGT TTTTAGAATT TTCTATCGAT
TATTCGAAAC CGCTGGCGGC CAACAATGGC TCCTGGACGC TGGTCAAAAA TTGGCGCGCA
ACGCTCCCGG CCGATTATTT TGAGGTTTTA TCGATCAATC ATACGTACAT CACCAACATA
TTCCGGGATG TGCTGACCAT GCCCAACGGG CGCGTTTATG GCTTCCTCAA ACGGTTCAGT
GACAATAAAC TGGTGGTGGT AGAACTGCCC GCCAGCGGCC CTTTACGCAT TACCAATCAG
GCCTTTGATG CTCAGAATCG CTACACGTAT CATATCACTC CCGATGGGTC GCTGAAGCAA
TCCGCCAATA ACTACTCGGG CACAACGGGT ACCATTGACT GGGAGAACCG GCCGCTGAAC
GGATTCGATG CCAGCAATAA CCCGATCTGG GGAACGCCCG TCAACTACGC TTCGGCACCG
ATCAGCACGG GTGAGGAGCC CGTTACCTGG TATGGCGGGC AGGGACGAAC GGGTGAAACA
AGCGCATCGG GTGTTATGAT TACATTCGAC GACGGGAAGG TGAATGGCGC CATGGGCGGA
GGATACCACC TGGGCGGTAT CAAGGCCAAT TCCAACAAAT GGTTGTGGAA AACAGCCCAT
GCCACTCTGG TCGACTACAA AGGTCCTTAC CCAACGGATG GTGCCTACGA TGTAGGTAAC
GGAGTTGTGT ACGGCGGGGG CGGGGTTAGT GTCTACGACC GGCATATTTT CTGGAACTAC
CACGGCGAGT TCTGGAAAGG TAGCCAGACC AACAAATGGC AGCATGTATA CGACAATGGC
CTGCTGGTGG GGGGCTTTGG GAAAACCGGT CCTGAGGCTC GTCAGGAGTC GGTCGATGGC
GGGCCTGTTC CTGGCATGGC CGGAAACGTT TACTATGGTA CGGTAGTGAA AGGAACGGAC
GGCAACGTTT ACCTCTACCA CGCCGAAGAA GCAGGCTGGT CGGGTATACA CCGTTGGAAA
ATCAATGGGA TCAATACCAT TCAGGAGCAG GTTATACCCC TGCAAAACCT GTCTGCCTAT
GCCATTAGCA CCGACCCGTC CGACCTCGGC GGAGTTGATC TGCTACAGGG TCTTGCCCGT
AAAAGTGTGC TCCAGAACGG AGCTTATGGA TGGACCCGTA ATCCGGCAAC TAACTTCGAT
AACGCTTACA ACGATAAATG GGTTGCGAAG ATGAGCGTGC TGGCGTACGA CCGTTTTACG
AGCCCCGATT TGTACGTCAA TTTCTCGAAG GCCAATAGCT CGTATACAGT TACCCGTGAT
CTGGGTAATA ATGTTGGTAA GACCTCCTGG AGTGTGAAAG GAACGATGAC ATTCGACGGT
ACCAATCCCA ACAACGGGGT ATCTGGTATG GCGAATACCG GTGGCTGTTA CTTCGATATT
ATCGACACCA ACGGAAAAGT AATTGCCCGC ATTAAACAAC AGGTCTTTTT CGAACAGACC
AATGCGCCAG TTAAACTGTA TGGCAATGAT AAAGTCATTG CGCAGGGGCA GTATTTCAAC
GCTGCGTCCC TGCCGGTAAC CGCATCTGAT CCTTTCGAAA TATCGATGAC AAATGACATC
GTGACCATTA AATACCGGAA TTTCGCTCCT GTTTCGTCTA TGGCCTTCGA CAAAGCCGCA
AACCTCAGAA ACCCGAAGTC TGTCCGGCTG TACTTCTGGT CGAACGGTAT TAACTACGAG
CGTACTATTG ATATTCAAAG CCTGCGGTTC TATACAGACA CCACTCCGCT GCCCACAATG
ACCAGCGTTA CGAACGGAAC GAAATATTAT GTGCAGGCAA AACACAGTGG TAAGTACCTG
GATGTGGCTT CTCAGTCAAG GGCGGATGGG TCTTCTGTCA TTCAAACGAC CTACACCAGC
GGTACCAGCC AGCAGTGGAC GCTAACCGCC GTAGACAATG ACGAGTACAC GATCAGCGCG
GTACACAGCA ATAAGTTACT GGATATAGAA GGTGCTTCGA CCAGCGATGG TGCTACAGCC
AGTCAGTGGT CATTCAGCGG GCAGGCCAAC CAGAAATTCA AATTGATTGA TGCGGGAGAC
GGCTATTTCA AGGTTGTAAA CAGCAATAGC ACCAGGTGTC TTGAGGTGCA GGCGAGTTCA
ACCGCCGATG GCGCACTCCT CCAGCAAAGT GCCTGTGGTG ATGGAAATAA TCAGAAGTTT
CTGTTTACCA AAGTAGCTGC GGTAGATATA AAACCCAGAG TTGTTGATTC TTTCGGTGGG
AATTCGGACG TGAAAGTGAC TATTTACCCC AATCCATCCG TCGATTTCGT AACCATTGAT
GGCGCAAAAG GGGCTGCCGT AACCGTTTTT GATGCACTTG GCCGGATAAA GCTGATCACC
GATTGCGCGG TTGATTCGTC TACACTTTCT GTTTCTTCCC TAAGCACCGG CGAATACATT
CTCCAACTGA AAAAAGAGAA TCAGGTTATC AATAAAAAGC TCATTGTGAG CCGTATGTAA
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| Protein sequence | MALLCFSLPK RVVAQTKRVV SFSFNLAADA RTSAGVFAKD GTLIRTLWSG VSLSAGSHSR
NWDGLNDDGQ TAATDSYDIR VLSNNVNYTW EGVIGNSSYG ISQNNNVQRA FLRMQSLAIS
GTNAYYGVGY AEGHPSQAKF VVGSPQSRIE FSPKGETAQA TLFTATDGTT VYWAGYDGYS
NGNNWFIFGT KTSDNTEQIF PNGQSLRMTL GKTYASCLDV LPQSDGTVTG LAVQKNGNYL
FVSHKALHQL RVYNKTTGAL AQTLAFNDAA GLAVDGQDRL WVINGTTVRK YAVQADGNLL
DAGMALAGLE RPMALAVSPD NGTVLVADGG GSQQLKAYSN VAGMPLWTFG QRGGYMTDPT
VSNDKFYFSD VSGVINDTFL AFQADGSFWV GDSGNYRAQH YSASRTFIDR IQYMQNNYSC
YVDQNNPSRV FAQFLEFSID YSKPLAANNG SWTLVKNWRA TLPADYFEVL SINHTYITNI
FRDVLTMPNG RVYGFLKRFS DNKLVVVELP ASGPLRITNQ AFDAQNRYTY HITPDGSLKQ
SANNYSGTTG TIDWENRPLN GFDASNNPIW GTPVNYASAP ISTGEEPVTW YGGQGRTGET
SASGVMITFD DGKVNGAMGG GYHLGGIKAN SNKWLWKTAH ATLVDYKGPY PTDGAYDVGN
GVVYGGGGVS VYDRHIFWNY HGEFWKGSQT NKWQHVYDNG LLVGGFGKTG PEARQESVDG
GPVPGMAGNV YYGTVVKGTD GNVYLYHAEE AGWSGIHRWK INGINTIQEQ VIPLQNLSAY
AISTDPSDLG GVDLLQGLAR KSVLQNGAYG WTRNPATNFD NAYNDKWVAK MSVLAYDRFT
SPDLYVNFSK ANSSYTVTRD LGNNVGKTSW SVKGTMTFDG TNPNNGVSGM ANTGGCYFDI
IDTNGKVIAR IKQQVFFEQT NAPVKLYGND KVIAQGQYFN AASLPVTASD PFEISMTNDI
VTIKYRNFAP VSSMAFDKAA NLRNPKSVRL YFWSNGINYE RTIDIQSLRF YTDTTPLPTM
TSVTNGTKYY VQAKHSGKYL DVASQSRADG SSVIQTTYTS GTSQQWTLTA VDNDEYTISA
VHSNKLLDIE GASTSDGATA SQWSFSGQAN QKFKLIDAGD GYFKVVNSNS TRCLEVQASS
TADGALLQQS ACGDGNNQKF LFTKVAAVDI KPRVVDSFGG NSDVKVTIYP NPSVDFVTID
GAKGAAVTVF DALGRIKLIT DCAVDSSTLS VSSLSTGEYI LQLKKENQVI NKKLIVSRM
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