Gene Slin_6286 details

Gene Information

• Locus tag: Slin_6286
• ID: 8730070
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: +
• Start bp: 7622990
• End bp: 7626496
• Gene Length: 3507 bp
• Protein Length: 1168 aa
• Translation table: 11
• GC content: 53%
• Product: TonB-dependent receptor plug
• Protein accession: YP_003391044
• Protein GI: 284041114

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 31
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCAAATC ATTTACGAAG GGCCTGTGGC GCAGGCATTC TTTCCTTATT AGTACTGGTT 
GGGTTTCAGC CCGGCTGGTC GCAGTCGGTT GTGCTGGCCA GTAGTGTTCA GCAGAAGCGG 
GTAGCCACGG TTGAAACGAC GGTGAAGCGA CAGCTCAAAG ACGTACTCAC CGACCTTAAA 
ACCCAGTACA GCGTCGATAT TATGTTTGAA ATGCGGACGG TCGAGGGGCT TTCTGTGGCA 
GCAGAGACTC TAAACGCGAA CGCTACGCTG GATAGGAACC TGGAAGCGAT TTTACAGCCG 
CTGGGACTTC GGTTTAAAAA AGTAAACCAT AACTCGTACC TGATTCTTGC CGCCAGAAAA 
GTAAAAAAAG TAACGGCCAT ATCGGGCGAA CTTCCGGTGC AGTTACTTAA TCAGAGTCCG 
GTTTCGGAGA GCGAACCCGC CATAAAAGCA CCTGCTTTAG CCGCTTTGGT AGCAACAAAG 
ACAGATACCA AAGTAGCCGT CGATCAACCC GTTACGGGAA CGGTTAAGAG CGAAACCGGC 
GAAACCCTGC CCGGCATCAA TGTGGTAATC AAGAGTACTA CGCGAGGAAC CACTACCGAT 
GCCAACGGTC GGTTTACCCT GGAGGCACCC GCCAATGCCA CACTTGTTTT CTCGGGAATT 
GGCTTTACTA CCCAGGAGGT AGCCGTAAAC GGGCGGACAC GTATAGATGT GGCGTTATTG 
ACGGATAATA AGCAACTTGA GGAGGTCGTC GTTGTGGGTT ATGGCACCCA GAAACGTAAC 
AGCCTGACCA ATTCCGTGGC GCAGATCGGT GCCGAAGAAA TTGCCCGTCG GCCGGTTTCC 
AACATCCAGC AGTCGTTGCA GGGGCAACTG CCGGGCGTTA CGGTGCTCGA TCAGGGGGGA 
TCGCCGGGCC GTTCCAACAC CGCTATTCGC GTTCGTGGGA TTACCACATT TAACATTAAT 
GGCATCAGCA ACACTGCCGG TACCAATAAC GGCAGTGGCG GCTACGACAT GAGTAAGAAC 
GATGCGCTGG TGATCGTGGA TGGCATCGAG CAACGGCTTT CGGACATTAA CCCGGACGAT 
ATTGAAACGA TCTCAATCCT GAAAGATGCG GCTTCAACGG CCATCTACGG GTCGAGGGCA 
ACCAATGGCG TAGTGCTGGT AACGACCAAA CGGGCTAAAG GCAGCAAGGT ACAGGTGGAG 
TACAACGGTT ATTATGCCAT CCAGAACTCC ATCAATAAAC CGACCATGAT GGGCATTGAA 
GACTACATGC GGTTACAGGT GGTGGCGTAC ACCAATGCCG GGGCCGCTTT GCCCGCCCGG 
TTCACGGAAT CGTCTATTCA GGCCTATGTA ACGGCCACCG ACCGTGAGAA ATACCCGATG 
CCGAACACCT GGTTTCAAAC GGTACTACAG GCGGCTCCCC AGCAAAACCA CACGCTTGCC 
GTTGCGGGCG GCACCGAAGC CCTGCGCACC CGGTTGAGCC TGCGCTATCA GGATCAGGGC 
GGTATCATTA CGAACTATAA CAGTAAAATC GGGGAGATTC GCCTGAATAC CGATTACACG 
ATTTCGCCCA AACTGCGCGT CAGTGGCGAT ATCAATTACC GGTACAACTA CTCGCAGGCA 
CCCACTATCG ACCCCATTAA CTTTCTGTTT CACGGGTCGC TCTGGGCGGT GCCTAAATAT 
GCCGATGGTA CCTACGGACT GAGTACGCAG GGCAATAACC CGCTGATGTA CGCCGAAATC 
GGAGGCAACT CCAAACGCTC GACGGATTAT CTGGCGGGCT ATGTCAAAGC CGACTGGGAG 
ATTCTCGACG GGCTGACGTT TTCGACACAA CTGGCCGGAC GAGGCTTTTT CACCCAGGAT 
AAGAACTACG CGAACTCCTA CGTGAACGTC GATAAGAATA CCAACATTAC CAAAACGGTC 
GCTAACAACA CCCTGACCGA AATTCGGAAC ACGCTTCGCG AATACACGCT GATCAACCTG 
CTGACGTACG AACGGAAGTT TGGTAGCCAT AATCTGAAAG GCTTGCTGGG TTATTCGCAG 
ATTGGCAATA CGCAAACGTT CCTGAGGGCT TATCGCGAAC GGTTCTATAA CAACGACATT 
CAGTCGATTG GGCAGGGAGC TAACGACGGG ACAAAGAGCA ATGATGGTAA CGATGCGGAT 
TACGGGTTGC GGTCGTACTT CGGTCGGGTA AATTACGACT ACGACGGCAA ATACCTGGTG 
GAAGTAAACG GACGGTACGA CGGCTCTTCG AAGTTTACGG GCCAGAAGCA GTATAGTTTC 
TTCCCGTCTT TCTCGGCGGG CTGGCGGCTT TCCAAAGAAA ATTTCTGGCA GGGTCTGCAA 
AAAACGGTCA ACGACTTCAA ACTGCGTGGC TCGTGGGGCA TAACCGGTAA CCAGTCGGTG 
AATCTGTACA GTTATTACGC TTCCCTGACG GGTAGCGGCT ACAACTTCAA CGGGGCCGCC 
GTGCAGGGGT ATCGGCAAAC GACGCTGGCC AATACCGACC TGGGTTGGGA GTCGACAACC 
CAACTGGATT TAGGGCTGGA TGCGTCTTTT TTTCGGAGCC GCCTGAATCT GACGGTCGAC 
TACTACCGGA AGCTCACGAA CGATATTTTG CTGAATCTGG ATATTCCGGC TACGATCGGG 
TTGATTGCTC CCCCGCAAAA TGCGGGCTCG GTCGAGAATA AAGGCTGGGA GTTTAGCCTG 
AACTACCGGG GTGCCAAAAA TCCATCGGGT TTCCAGTATA ACCTGGGAGC CAATTTCAGC 
ATCAACGAGA ATAAGGTCGT CGATCTGAAA GGCACCGGCC CGTACATTAT TGGGTCAGAC 
ATCGACCCCC GCTACATCAT TGCCGTTGGT CTGCCCATCA ATGCGCTATG GGGCTATAAA 
ACAGATGGCC TTTTCCAGAC GCAGCAGCAG ATCACCGAAT ACAAAGCCAC TTACGCGGCC 
AACACTAAAC CGGGCGACGT AAAATACATT GATGCCAATG GCGATGGCAA GATCGACGCC 
AACGACATGA CGAACATCGG TAACACGTTC CCCAAGTTCA CCTTTGGCCT TAACTCAAAC 
GTTTCCTACC GAAACTTCGA GCTGAATCTG CTCTTTCAGG GAGCTGCTAA AGTAAGCACC 
CGCCTGGCCG GGGCCTTGTC GGAAATGGGT AATCAGGAGG GCTTTACGCA CTCGATCTAT 
ACCAATAATT ACTGGACGCC CGACAACACC GGTGCCCGCT TCCCCCGCCC GGTCAAGTTC 
GACTTACGTA ACGTAGCCAC CTCCGACCGG CTGGTGATCG ACGGGTCGTA CGTGCGGTTG 
AAGAACATCC AGCTGGCGTA CTCCTTACCG GCGGCTCTGG CGTCGAAAGT GCGGTTGAGC 
CGGATTCGGA CGTACGTGTC GGCTACGAAC GTACTTACCT TCTCGAAATT GAATGAGTGG 
AATCTGGACC CCGAAGCAGG CTCCGGCCGG GGGGTGTATT ATCCGCAAAC GTCGTTGTAT 
ACACTCGGTC TCAACCTGCA ATTCTAA 

 

Protein sequence

MANHLRRACG AGILSLLVLV GFQPGWSQSV VLASSVQQKR VATVETTVKR QLKDVLTDLK 
TQYSVDIMFE MRTVEGLSVA AETLNANATL DRNLEAILQP LGLRFKKVNH NSYLILAARK 
VKKVTAISGE LPVQLLNQSP VSESEPAIKA PALAALVATK TDTKVAVDQP VTGTVKSETG 
ETLPGINVVI KSTTRGTTTD ANGRFTLEAP ANATLVFSGI GFTTQEVAVN GRTRIDVALL 
TDNKQLEEVV VVGYGTQKRN SLTNSVAQIG AEEIARRPVS NIQQSLQGQL PGVTVLDQGG 
SPGRSNTAIR VRGITTFNIN GISNTAGTNN GSGGYDMSKN DALVIVDGIE QRLSDINPDD 
IETISILKDA ASTAIYGSRA TNGVVLVTTK RAKGSKVQVE YNGYYAIQNS INKPTMMGIE 
DYMRLQVVAY TNAGAALPAR FTESSIQAYV TATDREKYPM PNTWFQTVLQ AAPQQNHTLA 
VAGGTEALRT RLSLRYQDQG GIITNYNSKI GEIRLNTDYT ISPKLRVSGD INYRYNYSQA 
PTIDPINFLF HGSLWAVPKY ADGTYGLSTQ GNNPLMYAEI GGNSKRSTDY LAGYVKADWE 
ILDGLTFSTQ LAGRGFFTQD KNYANSYVNV DKNTNITKTV ANNTLTEIRN TLREYTLINL 
LTYERKFGSH NLKGLLGYSQ IGNTQTFLRA YRERFYNNDI QSIGQGANDG TKSNDGNDAD 
YGLRSYFGRV NYDYDGKYLV EVNGRYDGSS KFTGQKQYSF FPSFSAGWRL SKENFWQGLQ 
KTVNDFKLRG SWGITGNQSV NLYSYYASLT GSGYNFNGAA VQGYRQTTLA NTDLGWESTT 
QLDLGLDASF FRSRLNLTVD YYRKLTNDIL LNLDIPATIG LIAPPQNAGS VENKGWEFSL 
NYRGAKNPSG FQYNLGANFS INENKVVDLK GTGPYIIGSD IDPRYIIAVG LPINALWGYK 
TDGLFQTQQQ ITEYKATYAA NTKPGDVKYI DANGDGKIDA NDMTNIGNTF PKFTFGLNSN 
VSYRNFELNL LFQGAAKVST RLAGALSEMG NQEGFTHSIY TNNYWTPDNT GARFPRPVKF 
DLRNVATSDR LVIDGSYVRL KNIQLAYSLP AALASKVRLS RIRTYVSATN VLTFSKLNEW 
NLDPEAGSGR GVYYPQTSLY TLGLNLQF