| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_6116 |
|---|
| Symbol | |
|---|
| ID | 8729897 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 7412260 |
|---|
| End bp | 7413927 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003390877 |
|---|
| Protein GI | 284040947 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.751728 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCACG TTTTATATAC GCCTAACCTT AAAAGGCGGC ACAAATTACC GGACTTTGTT
TCCGCGCTTG TCTCTTTCCT GGCCTTATGG TGTTTTACTT CGACTGCTCA TGCCCAAACG
ATACCCAATT CCATTACGGC TTCAGGGGCC TGCTTCACCA GTTCCTCTTT TGTGCTGCCC
CGAAATCAGG TTGACGCTGG TCCTTTGTAT AACGGAAAAC CGTATTACAG CCAAACGGGT
ATCAATGTGA CAACGGTCGG TTCAGGGGCA ATTAGCGGGG CAGTTGGTGT GTTTATATAT
TTTAACCCTG CTCTAGCGAC CGTTGGGGCG GCCTGGGTAG TGAATTTGGG GGGCCAGCCT
TATCTGTATC AGAGTGCGAA CGCTGCTTCG GCATTGCCGC CTGCTACAGA CTGGATTGCC
TTTCCGACTG GCAACGGACG GTCGGGTGCC TGCACTGGAG CGAATGCATT TTTCATTGAT
TATGGCAGCA CCTCAACCCC CACCATCACA GCAGGTACGG CTACGGGTAC CATCACGGCT
ACACAGGGAA CGGCTTCGGC ACCACCTAAT ATTCAGCAGT TTACCGTATC GGGTTCGGCC
TTGACGGGCA ATATCATAGC CACTGCCCCC ACCAACTTCG AGATTTCGAC CGCGTCGGGT
AGTGGCTATG CCGCATCGCT CACGCTGACC CAGGCCAGCG GCATAGTGAA CAACACCACG
GTCTATGTGC GGTCGGCGGC ATCGGCACCC GCCAGTAGCA TTTCGGGCAA CGTGAGTCTC
ACCTCAACCG GGGCCGCCAC CCAAACGGTA GCTGTGGCCG GAAACATCAG TGCACCTACG
CCTACCATAA CAGCTAGTAC GGCTACAGGC ACCATCACGG CCTGTCAGGG AACAGCTTCG
GTTTCACCTG CTGTGCAGTC GTTTGTCGTC TCTGGCTCAT CGCTTACAGG CGACATTGTT
GCTTTGGCGC CCACTAATTT CCAGATTTCG ACTGCTTCGG GTAGTGGTTT CGGAGCATCG
CTGACCTTAA CCCAATCGGG CGGCACGTTG GCCAACACTA CAATTTACGT ACGGTCGGCG
GCATCGGCAC CCGCCAGTAG CATTTCGGGC AACGTGGGTC TCACCTCAGC CGGGGCCACG
GCGAAAAACG TGGCCGTAAC GGGAATCATA ACGATGCTGC CCAGCATAAG CATCTCGCCA
TCGTCGCCAA CCATTACACA GGGTAGTACC ACTATACTCA CGGCCAGTAC CGCAAACTCG
TATTTGTGGT CGAGCAATGC AGGCAGTGCC ATAACTGCCT CGGTAACGGT GAATGCCAGC
GGAACTTATT CGGTGACGGG AACCACCAGT GGCTGCTCGG GTACGGCCAC GGCTGAAGTA
ACGGTAACAG CAGGAGGATC GTCGCTGACG GCCACTAACT TCCGTTCGCT GGTATTGGGT
CCTGGCAACT GCCCCGGTAA AGTGCTTTTC GACGGGACGG GTAAAATCTT CACCGTCAGT
GGTCCAGGCG GCTACACAGG TGCTCCATTC TTCCGTACTG TGGTTACGAA AACGGACCTG
GCCTTCAGCA ACATCACTCA GTCTGGCCTG TACACGGTTG TAGTTACCGG CACATCAGGG
CAGGCCCCCG CAACGTTCAC CTTCACCGTA ACAGGCAGCT GCCCGTAA
|
|---|
| Protein sequence | MKHVLYTPNL KRRHKLPDFV SALVSFLALW CFTSTAHAQT IPNSITASGA CFTSSSFVLP
RNQVDAGPLY NGKPYYSQTG INVTTVGSGA ISGAVGVFIY FNPALATVGA AWVVNLGGQP
YLYQSANAAS ALPPATDWIA FPTGNGRSGA CTGANAFFID YGSTSTPTIT AGTATGTITA
TQGTASAPPN IQQFTVSGSA LTGNIIATAP TNFEISTASG SGYAASLTLT QASGIVNNTT
VYVRSAASAP ASSISGNVSL TSTGAATQTV AVAGNISAPT PTITASTATG TITACQGTAS
VSPAVQSFVV SGSSLTGDIV ALAPTNFQIS TASGSGFGAS LTLTQSGGTL ANTTIYVRSA
ASAPASSISG NVGLTSAGAT AKNVAVTGII TMLPSISISP SSPTITQGST TILTASTANS
YLWSSNAGSA ITASVTVNAS GTYSVTGTTS GCSGTATAEV TVTAGGSSLT ATNFRSLVLG
PGNCPGKVLF DGTGKIFTVS GPGGYTGAPF FRTVVTKTDL AFSNITQSGL YTVVVTGTSG
QAPATFTFTV TGSCP
|
|---|
| |