Gene Slin_5932 details

Gene Information

• Locus tag: Slin_5932
• ID: 8729713
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: +
• Start bp: 7187131
• End bp: 7190679
• Gene Length: 3549 bp
• Protein Length: 1182 aa
• Translation table: 11
• GC content: 54%
• Product: protein of unknown function DUF1549
• Protein accession: YP_003390693
• Protein GI: 284040763

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.453716
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 42
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCTCGTCT GGTCAGACAT ACGATTCAAA TACGTTTTCC TCAGCGCAAC GGCTGGCTTG 
TTTGGGACGT CTATCTGGCT AACGTCCTGC CAGAGTTCAG TCGAAAAGCC GGCCGAGATT 
GTGGCCGTCG AGGCAACGCT CCCCGAAAAA GTTGATTATA ATCTGCACGT AAAGCCGATC 
CTGTCTGACC GTTGTTTTGC GTGTCATGGC CCCGACAAAG CCAAGCAACA GGCGGGTTTA 
CGCCTGGATA CGCCCGATGG TGCTTACGAA GCCCTGGCGA AAAGTGGCCA CAAGGCTATT 
GTGCCGGGTA ATCTGGCCAA GAGTGAACTG GTCAGCCGTA TCCTCAGCAC CGATCCGGAG 
GAGATGATGC CCACGCCCAA GTCGAACCTG ACCCTGACAA CGGAAGAAAA GGCGATGCTG 
ATTCGCTGGG TTGAGCAGGG GGCCGAATAC AAAGAACACT GGTCGCTTAT TGCGCCGACC 
CTGCCGGAGA TTCCGAAAGT AAAAGACGAA AAATGGGTTG TCAATGATAT TGACGGGTTC 
ATCCTGGCCA AACAAGAAGC AAAAAAAGTA AGCCACGCAC CCGAAGCCGA TAAAACCACC 
TTGCTCCGCC GGGTAAGCCT CGACCTGACG GGCTTACCAC CAACACCCGC CGAAGTCGAC 
GCTTTCCTGG CTGATAAATC CCCCAATGCC TACGAAAAAG TAGTGAATCG GCTGCTCAAC 
AGTCCGCATT ATGGCGAACG GCAGGCCGTC GAATGGCTCG ATGTGGCGCG GTATGCCGAT 
ACGCACGGGT ATCAGGATGA TGGACTTCGA ACCATGTGGC CGTATCGGGA TTGGGTTATT 
CGGGCCTATA ATCACAACCT TTCGTTCGAC CGCTTTATAA CCTGGCAACT AGCGGGTGAT 
TTGCTGCCCA ATCTGAACGG CTCGAAAGAC AAGCGCGAGA AACTCATTGC CACCGCCTTC 
AACCGCAATC ACCAGCAAAG CCAGGAAGGT GGAATCGTCG ACGAAGAATA CCGGACTGAA 
TACGTTGCCG ACCGGACCAA TACCTTTGGG AAAGCGATGC TGGGGCTAAC GGTCGAGTGC 
GCCCGTTGCC ACGACCACAA ATACGACCCC ATCAGTCAGA AAGATTATTA TTCGCTCTAC 
GCCTTTTTCG ATAGCAACAA CGACCGGGGC CAGATTCCCT ACAACGGCGA AGCTGCCCCG 
ACGATTACCC TTACCAAGCC CGAAACGGAA GCGAAACTGC GCTTTATCCG CGAAAAATTA 
ACGCCCATTC AACAGCAGCT CAATCTTAAC CGGCCCGACT ATCAGCAGCG TTTTGGGCAA 
TGGCTGGCGA AAACCCGTGT GGTGTCGTCT ATCGATTCCG GGTTGTTGGC GCATTATACG 
TTCGATGAAG CCGACCGGAC GGATATCGGC GCTTACGTAA AAGCGAAAAA CGAGGAACGG 
AAACGCGAAG AGGAAAAGAA GAAACGCGAG GAAGACGCAA AACGAAAGAA AGAGGGCATA 
GCCAAAGCCG GTAAGCCAGA GGCTAAACAA CCTGAGAAAA AAGAACCGCC CAAGCGTAAA 
ACAAAAGAAG AACTTTGGAA AGACCCACGA AATGCCTTTG CTAACTCGGT GAACGATACC 
ATTCCGGCCC GCCTGGGGGG CGACCCTGAT AAAGTGCCTT ACGTTGTTCC CGGCCGCTTT 
GGAAAAGCCC GGTATCTGGC AGGCGACAGT TTCATTGAAC TACCCGGAAA CTTCGCGGTC 
TTCGAGCAAA ATGAGCCGTT TACCGTAAGC AGTTGGTTCA ATCTGGCCAA GCCAAATATG 
GCCCTGACAC TGATGGGACG AACCACCGGC CCAATGGATG GTCAGCGTGG TTACCAACTT 
GATTTGTTGA GCGACGGTCG GCTCAAGCTG GCGTTTAGTC ACGTATGGCC TGCTAATGCC 
ATTGACGTTG AGACGATTGA AAAAGTCCCG GTCCATCAAT GGTTCCAGGT CGCTTTTGCC 
TACGATGGTA CCGGCCGGGC CAACGGGATT TCCCTGTACC TGAATGGGCG GCCACTTCGC 
ACGAAGATCA TCGCCGATAA CCTGATACAC AGCATGGTGT ATGGCAAAAA CAGAAGCCAT 
TGGGCGCAGC ACCCCTTTTA TGTGGGCCGA ATGCACGATA ACTTTTACAA AGACTTTGCC 
GTCGATGAAC TGCGTATCTA TAACCGTTGC CTGACACCGC TGGAAATGCC AAAACTGGCG 
GGACAGCCGG ATGCACTCAT GGCCGCGCTG CAAACGCCCG CTGCCAATCG GACACCGGCT 
CAACGGACAG GCTTGTATAC GTATTACGTC AGAACGCAGG ACCCCGTTTA TAAAACGACC 
TATGCTAATG CTATGAAGTT GCGGGGCGAA CAAATCACCC TGTATACCGA CTCCGATCAG 
CTTATGGTCA TGCAGGAGCG GTCGGTGCCA CGCGAGACAC ATCTGCTCAA AAGAGGGGCC 
TATGATGCCC CCGGTGAGGT CGTGAAACCG GCCGTGTTGC ATAGCCTCAA TCCGTTGGAG 
GACGACATGC CGACGAATCG GCTTGGCCTG GCAAAATGGT TACTGGCACC CGAAAACCCG 
CTGTTTAGTC GGGTGATGGT GAACCGTATG TGGCAGCAGT ATTTCGGGCA GGGGCTTGCT 
AAAAACAGCG ACGATTTCGG GAACCAGGGC GCGTTACCCA GTCACCCCGA ATTGCTGGAC 
TACCTGGCGA TGAAATTCCG CGACATGGGC GAATGGGGCG GGCAGTGGAA TACAAAAGCC 
ATGCACAAGA TGATTGTTAT GTCGGCAACG TACCGGCAAT CGTCGAGCGT ACCCGAAAAT 
GTTCGGGAGG CTGACCCGGA TAACACCTAC CTGACGCGTG GGCCAAGTTA CCGCATGTCG 
GCCGAGCAGG TTCGGGATAA TGCGTTGGCG GCTAGCGGAC TACTTGCCCG GCAGATCGGT 
GGCCCGAGCG TATTGCCCTA TCAGCCGTCG GGTATCTGGG AAGCGTTGGC TACCCGGAAC 
GCTGTGAAGT ACGAACAGGA TCATGGCGAT AGTCTATACC GCCGGTCGAT GTACACCATC 
TGGAAACGGT CATCACCACC GCCCATGATG TTGAATTTCG ATGCGGCCGA GCGACATACC 
TGCATTGTGA AACGCCAGAA AACCAGTACA CCTTTACAAG CACTCGTAAC GCTGAACGAT 
CCGCAGTTTG TGGAAGCTGC ACGAGTGCTT GCACAAAAAG TAGTGCCGAC GTCTGTAGTG 
CCGACCGTCC CGGTCGGGCG AGCTGGTTCT ATACGCCCGA CCGGGACGGT CGGCACTACA 
GACGTTGGCA TCAACGCTAT TTTTAAAGCG GTTATCAGCC GCCCGGCCCG ACCAGAGGAG 
ATGGCGCTGG TGAACCAGTT GTACGCCGAA GAACTGGCTG ATTTTAAACA AAATCCGAAG 
CGGGCCGCAG AGTTGTTATC AGTGGGGGAG TATCCTGTTG ATAAAAAGCG AAATCCAGCC 
GAATTAGCTG CCTGGACCGT GGTTACGAGT ACGATTATGA ATTTCGACGA AGCGATTGTA 
AAACGATAA 

 

Protein sequence

MLVWSDIRFK YVFLSATAGL FGTSIWLTSC QSSVEKPAEI VAVEATLPEK VDYNLHVKPI 
LSDRCFACHG PDKAKQQAGL RLDTPDGAYE ALAKSGHKAI VPGNLAKSEL VSRILSTDPE 
EMMPTPKSNL TLTTEEKAML IRWVEQGAEY KEHWSLIAPT LPEIPKVKDE KWVVNDIDGF 
ILAKQEAKKV SHAPEADKTT LLRRVSLDLT GLPPTPAEVD AFLADKSPNA YEKVVNRLLN 
SPHYGERQAV EWLDVARYAD THGYQDDGLR TMWPYRDWVI RAYNHNLSFD RFITWQLAGD 
LLPNLNGSKD KREKLIATAF NRNHQQSQEG GIVDEEYRTE YVADRTNTFG KAMLGLTVEC 
ARCHDHKYDP ISQKDYYSLY AFFDSNNDRG QIPYNGEAAP TITLTKPETE AKLRFIREKL 
TPIQQQLNLN RPDYQQRFGQ WLAKTRVVSS IDSGLLAHYT FDEADRTDIG AYVKAKNEER 
KREEEKKKRE EDAKRKKEGI AKAGKPEAKQ PEKKEPPKRK TKEELWKDPR NAFANSVNDT 
IPARLGGDPD KVPYVVPGRF GKARYLAGDS FIELPGNFAV FEQNEPFTVS SWFNLAKPNM 
ALTLMGRTTG PMDGQRGYQL DLLSDGRLKL AFSHVWPANA IDVETIEKVP VHQWFQVAFA 
YDGTGRANGI SLYLNGRPLR TKIIADNLIH SMVYGKNRSH WAQHPFYVGR MHDNFYKDFA 
VDELRIYNRC LTPLEMPKLA GQPDALMAAL QTPAANRTPA QRTGLYTYYV RTQDPVYKTT 
YANAMKLRGE QITLYTDSDQ LMVMQERSVP RETHLLKRGA YDAPGEVVKP AVLHSLNPLE 
DDMPTNRLGL AKWLLAPENP LFSRVMVNRM WQQYFGQGLA KNSDDFGNQG ALPSHPELLD 
YLAMKFRDMG EWGGQWNTKA MHKMIVMSAT YRQSSSVPEN VREADPDNTY LTRGPSYRMS 
AEQVRDNALA ASGLLARQIG GPSVLPYQPS GIWEALATRN AVKYEQDHGD SLYRRSMYTI 
WKRSSPPPMM LNFDAAERHT CIVKRQKTST PLQALVTLND PQFVEAARVL AQKVVPTSVV 
PTVPVGRAGS IRPTGTVGTT DVGINAIFKA VISRPARPEE MALVNQLYAE ELADFKQNPK 
RAAELLSVGE YPVDKKRNPA ELAAWTVVTS TIMNFDEAIV KR