Gene Slin_5918 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_5918 
Symbol 
ID8729699 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp7170894 
End bp7173383 
Gene Length2490 bp 
Protein Length829 aa 
Translation table11 
GC content50% 
IMG OID 
ProductATP-dependent protease La 
Protein accessionYP_003390679 
Protein GI284040749 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATTTAG ACCAAGATTT AGCTACCCGT TTGTTAATGA CCGATTTCGA TTCGGACAAT 
TTGGAAATTG TGCCGCTTGG GTCGCCGGAG GGGTTAGATG ATGATTACGA ACTGCCGGCA
AATCTTCCCA TTTTGCCGGT TCGCAATACC GTTTTGTTTC CAGGAATGGT TATCCCCGTT
ACGGTTGGAC GGTCGAAGTC AATCCGATTA GTAAAAAAAG CGTATAAGGG GAACAGAATT
ATAGGTGTTG TTGCTCAGTT GAATCAGCAA AAAGACGAAC CTACGGTCGA TGATCTTTAT
CGGTTCGGGA CAGTCGCCTA TATCATCAAG ATGATTACGT TGCCCGATGG CAACATAACC
ATAATCATTC AGGGTAAGAA GCGTTTTGAA GTTCAGCAAA TCACGCAGGA GGAGCCGTTT
ATGACGGCTC AGGTCCGGCA AATTGACGAC TCATTCCCTA ATGTAACCAA GAAGGAAGGT
AAAGCTCTGT TGCAATCGCT GAAAGACGCT GCGTATAAGA TGTTGCGTCT GAATCCGGAA
ATTCCGCAGG AAGCCCGCAT TGCGCTCGAT AACATCGAAA GCCCGAACTT CCTGCTGCAC
TTTTTATCCT CGAACGTTAA TGCCGATGTA GCGGATAAAC AGCGGCTTCT GGAAACCCTC
GAAGGTAACC AGCAGGCTAA CCTGCTCCTT GAGTTTATGC TTCGCGAAGT GCAGTTGCTC
GAACTCAAGC GCGAAATTCA GTCGAAAGCG TCGTCTGACC TCGACCAGCA GCAGCGCGAT
TACTACCTCC GTCAGCAGAT GAAGGTTCTC CAGGATGAAC TGGGGATGGA AAACCCGGAT
CGGGATATCG ACGAACTACG CATTAAAGCT GACCGCAAGA AATGGTCGAG CGAGGTGCGG
GCTCATTTCG ATAAGGAACT GACCAAGTTA CAGCGCATAA ATCCCATGGC ACCCGAGTAT
CCGGTTACCA TGAACTACGT TGAGCTGATG GTCGACCTGC CCTGGAATGA ATACACCAAG
GACAACTTCG ACCTGAAGCG CGCTCAGAAA ATTTTGGATA CGGATCATTT CGGTCTGGAA
AAAGTAAAAG AACGGATCAT TGAATACCTC GCCGTTCTGA AGCTTAAAAA CGACATGAAA
GCGCCAATCC TTTGCCTATA CGGCCCACCG GGTGTGGGTA AAACCTCGCT GGGAAAATCG
GTAGCAAAGG CGCTGGGCCG GAAATATAGC CGGATGGCCC TGGGTGGCGT ACACGACGAA
GCCGAAATTC GTGGTCACCG CAAAACATAT ATCGGCGCCA TGCCGGGCAA AGTCATTCAG
AATATTCGCA AATGCGGTAC GGCCAACCCC GTATTTATTC TGGACGAAAT CGACAAGGTC
AGTTCCGATT TCCGGGGCGA CCCATCGTCG GCCTTGCTCG AAGTACTGGA CCCTGAGCAG
AACTCGACGT TCATGGACAA TTACCTCGAA ACCGAGTTCG ACCTCTCGCG GGTATTGTTC
ATTGCCACGG CTAACTCGCT CGACACCATC CACCCCGCCC TGCGCGACCG GATGGAAATC
ATCGACATTG CGGGGTATAC CGTTGAGGAG AAAGTGCAGA TTGCCAAGAA ATACCTCATT
CCCAAACAAC GCCGGGATCA CGGCCTCAAG CCAAAGGACT TGGCCTTCGA CGACAAAGCC
GTTTTACGCA TCATTGAAGG ATATACCCGT GAATCGGGCG TCCGGAATCT GGAGCAGAAA
ATTGGCGCGT TGATCCGGAA AGTGGCCAAG TCCATTGCTA TGGAGGAGGA ATACAACCAT
ACAATTAAAG TCAATGACAT CCCCAAAATG CTCGGCGTCG AAATCTTCGA TAAAGAACTC
TACGCTGATG ATGACATTGC TGGTATTGTA ACGGGTCTGG CCTGGACACA GGTTGGGGGC
GAAATTCTAT TGATCGAATC CAGTCTGAGC CGGGGCAAGG GAGTGCTTAC ATTATCGGGG
CAACTTGGTG ATGTAATGAA GGAATCGGCT ATTACGGCCC TCTCCTACCT GAAAGCCCAT
GCCGACGATC TGGGCATCGA TTATCGCATT TTCAGCCATT ACGACCTGCA CATCCACATT
CCTGCCGGTG CTGTTCCTAA AGACGGACCT TCGGCTGGGA TTACCATGCT CACGTCGATG
ACATCTATTT ACACCCAGCG TAAAGTGAAG CCTTATCTGG CTATGACCGG TGAGGTGACC
CTGCGGGGTA AAGTGTTGCC CGTAGGTGGT ATCAAGGAAA AAATTCTGGC GGCTAACCGG
GCAGGTATTA AAGAGCTTAT CCTTTGTTCG AAAAACCGAA AAGACATTGA GGAGATCAAC
CAGTCGTATA TTAAAGACCT GGTGTTCCAC TATGCCGATA CGGTCGATCA GGTGCTTGAA
ATCGCTTTAC TTCCTGGTAA GGTTGGTAAG CCGATGAAGT TTATCCTTCC TGAAGAAAAA
GAGCCGCGCG AAGTAGAGAA AGTATATTGA
 
Protein sequence
MHLDQDLATR LLMTDFDSDN LEIVPLGSPE GLDDDYELPA NLPILPVRNT VLFPGMVIPV 
TVGRSKSIRL VKKAYKGNRI IGVVAQLNQQ KDEPTVDDLY RFGTVAYIIK MITLPDGNIT
IIIQGKKRFE VQQITQEEPF MTAQVRQIDD SFPNVTKKEG KALLQSLKDA AYKMLRLNPE
IPQEARIALD NIESPNFLLH FLSSNVNADV ADKQRLLETL EGNQQANLLL EFMLREVQLL
ELKREIQSKA SSDLDQQQRD YYLRQQMKVL QDELGMENPD RDIDELRIKA DRKKWSSEVR
AHFDKELTKL QRINPMAPEY PVTMNYVELM VDLPWNEYTK DNFDLKRAQK ILDTDHFGLE
KVKERIIEYL AVLKLKNDMK APILCLYGPP GVGKTSLGKS VAKALGRKYS RMALGGVHDE
AEIRGHRKTY IGAMPGKVIQ NIRKCGTANP VFILDEIDKV SSDFRGDPSS ALLEVLDPEQ
NSTFMDNYLE TEFDLSRVLF IATANSLDTI HPALRDRMEI IDIAGYTVEE KVQIAKKYLI
PKQRRDHGLK PKDLAFDDKA VLRIIEGYTR ESGVRNLEQK IGALIRKVAK SIAMEEEYNH
TIKVNDIPKM LGVEIFDKEL YADDDIAGIV TGLAWTQVGG EILLIESSLS RGKGVLTLSG
QLGDVMKESA ITALSYLKAH ADDLGIDYRI FSHYDLHIHI PAGAVPKDGP SAGITMLTSM
TSIYTQRKVK PYLAMTGEVT LRGKVLPVGG IKEKILAANR AGIKELILCS KNRKDIEEIN
QSYIKDLVFH YADTVDQVLE IALLPGKVGK PMKFILPEEK EPREVEKVY