Gene Slin_5655 details

Gene Information

• Locus tag: Slin_5655
• ID: 8729429
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: -
• Start bp: 6887603
• End bp: 6891097
• Gene Length: 3495 bp
• Protein Length: 1164 aa
• Translation table: 11
• GC content: 54%
• Product: TonB-dependent receptor plug
• Protein accession: YP_003390419
• Protein GI: 284040489

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.268168
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 29
• Fosmid unclonability p-value: 0.858728
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACGCAAC CTCTTACTGC CATGACTAAA CAATTAATTG CGCTTGGTTC GTTGCTACTG 
ATTGGAATAC TACCGACTCG GGCACAGCTC GTGGCTTCCA GCAATCGGTA TGCCTCCTAT 
CAGAAGCAGC CAACAGATAC CCGCTTGATT ACGTTGAAAA GTGCGTTAAG TGAGCTTGAA 
CAGCATTACA GCGTTTCGTT TATTTATCCA ACCAACCTGG TCGACACCAA AGTCTCGATG 
GTCAACCAGC GTAATCGGAA TCTCGAAACG GAACTCGCCA GTTTACTCAA CAGCACCGGC 
TTAACGTACC GAAAAGTCCA GCCCCGCTTT TATGCCATTG TCCCGGAAAA GGAAAAGAGC 
ACACGGCTTT TTCGTAAAAT CGAACAGATC GAAACCAAAA CTACTACCGA TCCATCGACA 
GAAGCCGTAA GGTTACCCGA ACGCACCATC GACAAACTGG AGCGTATTGG ATGGTCTACT 
ACATCGGCCC AGCCCTTAGC CGACATTACG GGTAAAGTAC TGGACAAAAA CGGGCAGGGA 
ATTCCGGGGG TTAGTGTTGT TATTAAAGGC ACCACACGAG GCACTACGAC CAATACAGAC 
GGGGAGTACA ACCTCAATGC CCCGAATAAC GCGGTGCTGG TATTCAGTTT TGTCGGTTAT 
GCCTCGCAGG AAGTTGCCGT AGCCAACCGA AGCCGCATTA ACATTACCCT GCTGGACGAT 
GTAAAATCCA TCAGCGAAGT GGTTGTTGTC GGTTACGGTA CCCAGAAACG GGCGTCGGTA 
ACGGGTGCTA TCTCGTCGGT ATCCGCCCAG GAGGTAACAC AACTGCCCGT ACCGAGCGTG 
GAGCAGGCCA TTCAGGGACG CGTGCCGGGC GTAACGGTCG TGAGCAACGG CTCCCCCGGC 
GAAACACCCA TTGTGCGTAT TCGGGGCATT GGTTCCATCA ACTACGCGGC TAACCCGCTG 
TACGTTATCG ACGGTTTTCC GACGAGTGAC CTAAACAACT TCGACACCCG CGACATTGAG 
TCGGTCGATG TATTGAAAGA TGCCTCCTCA GCCGCCATCT ATGGCTCACG GGCGGCCAAT 
GGCGTTATCA TTGTCACGAC CAAAAAAGGT AGTGGAGATG GTAAACTGCA CGTCAACTAC 
GACGGCTACG TAGGCACACA AAGTGCCTGG CGTCAACTCG ATCTACTCAA CCGGGACGAG 
TACATCCAGT ATGGCACTGC CCTCCGGACC AATGCCGGTC AGCCGGTGCC AACGCGGTTC 
AGCAACCTGA ATCAGCCCAT TTATACTGGG GCTTCTCAAA CGTACGCTCA AACGGATACC 
GACTGGCAGA AGGCCGTATT CCGGGATGCG CCCATTACGC AGCATAGCGT TCAGTTATCG 
GGCGGTAACG AAAAGTCGCG TTTCTATTCA TCTGTCGGCT ATTTCAATCA ACAGGGTATC 
ATGATTGGCA CGGGGTACAA GCGCGGCAAC TTCCGCATCA ACTCCGACCA TGCCATTAGC 
AAGCGCTTCT CATTCGGGCA AACGCTGACC ATCTCCTACG ACGATAAGCT TAACGAAGTA 
AGCGCCGGAG GCCGGACACA GGTTCAGAAC ATGATCCGCA TGACACCTTA CATGCCCGTT 
GAAGACCCTA CCCTGCTCGG CGGTTACCGT GGTCCCGACG GCTCCGACGG CTCTGACCCC 
CAAAACCCGG TACGGGCCGC GCTACAGGAC CAGAGCAACA CCCAGCGCAT GAAAATCCTG 
GGAAGTGCTT ATGTCGATGT CAAGATCATT GACGGGCTGA CCTACCGCCT GCGCGGAGGT 
ATCGACTACG TAACGGCGCG TACCTTTTCC TTCCTGCCAA TCTACAGTGA GAGTTTCAAC 
GCCCGGGCGC TGGCCAACAT TTCCGACGAC CGGCTGACGT ACGCTTCTCC CCTGATCTCC 
AATCAGTTGA CCTACGAAAA AACATTTGGC AAACACAGCT TCAATGTCGT TGCCGTAGCC 
GAACGGCAGG CGGGCAACAG CCTTCAGATA GTTGGAACAG GCCAGGCCGC TTCAAATACG 
ATTCGCGAGT TGAGCGCCGT TATTAGTACG AGTGCGGGTT TAAACGGCAC TCGCTCTCAA 
AACGTGCTGC TGTCGTATCT GGGTCGCCTT AATTACGAGT ACGCGGGTAA ATACCTTCTG 
GGTGCCTCGT TCCGGCGGGA TGGCTCGTCG CGGTTTGCAC CGGGTAATAA GTGGGGTAAT 
TTCCCATCGG TGTCAGCGGG CTGGCGGATT AGTGAAGAAG CTTTCCTGAA AAATGTACCG 
GCTATTTCGG AATTGAAGGT TCGTGCCAGC TATGGTACGA TGGGCTTCAA TGGTATCGGC 
GATTACTCGT GGCAGGTGGC CGTCTCTCAG AACACGAACG CCATCATCGG GGGCGACCGC 
ACGCAGGGAA CCTACTTCGA CCGTCTGGGC AACACCGACC TGCGGTGGGA AGTTACGAAG 
ATGAGTAACG TCGGGGTTGA TCTGGGCTTG TTCAGCAACA GCATAACCCT CTCGGCCGAA 
GTTTATCAGC GAAATACGGA CGGCCTGATT CTGAACCAGC CCATTGCGCC ATCCATCGGT 
TATTCGCAAT CGCCCATTGT CAACGTGGGC AGCATGCGGA ATACGGGGGT CGAAATGCAA 
CTTGGCTATA ACAAAACGAA GGGCGCTCTT CGATTCAACG CATCGGGCAA CATCAGCTTT 
ATTAACAATA AAGTGCTGAG CCTCGGGCCC ACCGTGTCGC CCCTGCTCAA TGGTGCCAAC 
GCCGATTACG GCGGATTCGA CATTACCCGT ACCGAAGCCG GTCAGTCAAT TCAGTACTTC 
TACGGCTGGA AAGTAGCGGG TATCTTCCAG AATGCCGACG AAATCAAATC AGCTCCAACG 
CAGGCCAATG CCGCGCCCGG CGACCTTCGC TTTGTCGATG CAAACGGCGA TGGCAAGATC 
GACGCCAGCG ACCGGGTAAA CCTGGGCAGC TTCCTGCCAA AATTCACTTA TGGACTGAAC 
CTGTCGGCCA ATTACCGCGG CTTCGATCTA TCGATGTTCT TTCAGGGTGT TCAGGGCAAC 
AAAATTTACA ACGGCGTAAA AGTTCTTGAG CAGGGTATGC TCCGGTTGTT CAATGCCGGA 
ACGGATGTGC TGCGGGCCTG GACACCAACC AATACGGTGA CCGACGTACC CCGTGCCGTT 
GATGGCGACC CCAATGGTAA CTCGCGTACG TCAGACCGGT TCATTGAGGA TGGCTCCTAC 
TTACGGCTGA AAAACCTGAG CATCGGCTAT TCAGTACCAG CGGGTGCGTT ACAGGCATTT 
TCGCGCGGTA CCCTGAGCCG GGCGCGGGTC TATGTAGCAT CGACCAATCT GCTGACGTTT 
ACGAAATACA CTGGCTACGA CCCTGAAGTG GGCTCTCGCA CCAGCAATAC CAACCCAACG 
CTGACCAATG GTATCGACTA TGGACAGTTT CCGCAGGCAC GCACCTTCAT GGTAGGTCTT 
CAACTTGGTT TTTAA 

 

Protein sequence

MTQPLTAMTK QLIALGSLLL IGILPTRAQL VASSNRYASY QKQPTDTRLI TLKSALSELE 
QHYSVSFIYP TNLVDTKVSM VNQRNRNLET ELASLLNSTG LTYRKVQPRF YAIVPEKEKS 
TRLFRKIEQI ETKTTTDPST EAVRLPERTI DKLERIGWST TSAQPLADIT GKVLDKNGQG 
IPGVSVVIKG TTRGTTTNTD GEYNLNAPNN AVLVFSFVGY ASQEVAVANR SRINITLLDD 
VKSISEVVVV GYGTQKRASV TGAISSVSAQ EVTQLPVPSV EQAIQGRVPG VTVVSNGSPG 
ETPIVRIRGI GSINYAANPL YVIDGFPTSD LNNFDTRDIE SVDVLKDASS AAIYGSRAAN 
GVIIVTTKKG SGDGKLHVNY DGYVGTQSAW RQLDLLNRDE YIQYGTALRT NAGQPVPTRF 
SNLNQPIYTG ASQTYAQTDT DWQKAVFRDA PITQHSVQLS GGNEKSRFYS SVGYFNQQGI 
MIGTGYKRGN FRINSDHAIS KRFSFGQTLT ISYDDKLNEV SAGGRTQVQN MIRMTPYMPV 
EDPTLLGGYR GPDGSDGSDP QNPVRAALQD QSNTQRMKIL GSAYVDVKII DGLTYRLRGG 
IDYVTARTFS FLPIYSESFN ARALANISDD RLTYASPLIS NQLTYEKTFG KHSFNVVAVA 
ERQAGNSLQI VGTGQAASNT IRELSAVIST SAGLNGTRSQ NVLLSYLGRL NYEYAGKYLL 
GASFRRDGSS RFAPGNKWGN FPSVSAGWRI SEEAFLKNVP AISELKVRAS YGTMGFNGIG 
DYSWQVAVSQ NTNAIIGGDR TQGTYFDRLG NTDLRWEVTK MSNVGVDLGL FSNSITLSAE 
VYQRNTDGLI LNQPIAPSIG YSQSPIVNVG SMRNTGVEMQ LGYNKTKGAL RFNASGNISF 
INNKVLSLGP TVSPLLNGAN ADYGGFDITR TEAGQSIQYF YGWKVAGIFQ NADEIKSAPT 
QANAAPGDLR FVDANGDGKI DASDRVNLGS FLPKFTYGLN LSANYRGFDL SMFFQGVQGN 
KIYNGVKVLE QGMLRLFNAG TDVLRAWTPT NTVTDVPRAV DGDPNGNSRT SDRFIEDGSY 
LRLKNLSIGY SVPAGALQAF SRGTLSRARV YVASTNLLTF TKYTGYDPEV GSRTSNTNPT 
LTNGIDYGQF PQARTFMVGL QLGF