| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_5654 |
|---|
| Symbol | |
|---|
| ID | 8729428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 6886043 |
|---|
| End bp | 6887578 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003390418 |
|---|
| Protein GI | 284040488 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.576188 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCTA CATACTGGAC CTCGGGTATC GTGGCTATGG GGCTGTTCTT CGGATGCAGC
ACCAGCAGCC TGGATAAGGT GAATCCTAAC CAGGTCATTA CCGCCAATTA TTACAAAAAC
TCGGCTGAAT TGCTCAAAGG CGTCAATGCA GTTTACGCCG TCTGGCAAAG CGCCAACCTG
ACCGGCCGCG AATGGTTCTT CCTGCACGAT CTCCGCTCCG ACGATGTAGC CTCGGGTGGC
GGGCAGCTGG AAGCACCCCG AAACCAGATT TTATCAGGTG CTCAGAATCC CGGAAACGGC
GTTGCCTTAT CCGTATGGAA CGGCCTTTAT CGCGTTATCC ACCGGGCCAA CGTCGTGATT
GACAATGGCC CTGCCGTTAC GGACAATGCA GCTCTGGCAA AACGGGTAGT GGCCGAAGCG
AAGTTTCTCC GCGCCATGGC TTACTTCGAT CTGACAACCT TTTGGGGAGC CGTTCCGCTC
TATACCAACT ACGTTACCGA AGTAGATGGC ACCAAAGCAA AATCGTCGGT CGATGAAATT
TACACTCTGC TGACTACCGA TCTGCTGGCC GTTCAGACCG ATTTGCCCGC TACAGCTACC
GGGGCCGACC TCGGCCGGGC TACCAAAGGG GCGGCTCAGG CACTGCTGGC ACGGGTTTAT
ATGCAGAAAG GCGATTACGC CAGTGCAAAA ACCCAGCTTC AGTCGATCAT CAGTTCGGGA
CTTTACAAGC TAACGGCTAA CTACCTCGAC AATTTTATCG AAGAAACTGA ATTCAATACC
GAGTCGATCT TCGAGATTGG TTTCTCTAAA ATCGGTGATT TTAACTGGGA CGGTGATGGC
AATGATAACG GCGCTAATGA AACCATGACC CGCAGCCAGG AGTATTCGGC CATTGGCTGG
CGAAACCTGA TTCCATCAGA CGGCTTGCTG AACGAATACG AAAACACGGC TAAAGGCGAC
GCCAAAACCG ACCCGCGCCT GAAGTATAAC TTCTACTTCA TTGGCGATGC GTACAACAAT
GGCCTGAATA CGTTGATGGA GTCGCAGGTG CAGGGAAACA CGTCTGTCGT GAATGGGGTG
ACGCAGAAAG TTAGCTGGCG GAAATACACG GCGATGTATA AAAACAACGA AACCTTCTAC
ACATCCGGCA TCAATATGCG GCTAATCCGG TACGCAGAAG TGTTGCTGAT GATGGCCGAA
GCAGAGAACG AAACCGGCAA CAGTGCTAAC GCCATTGCGC TGCTCAATCA GATACGGGCT
CGGGCAAGCG TAGCCATGCC ACCGTATCCT ACGGCTAACT ATCCGGTAAA TAGCAAGGCG
GAAGTGTTCA GGGCCGTTGT CCACGAAAAA CGGGTAGAAC AGGCGGGCGA ACAGATTCGT
AACCGGGATA TTCTGCGCTG GCGGGCCCAA AACAAACTTC AGACTGAGCC AATACCCTAC
TTTGCTAAGG GGAAACAGGA ACTGCTGCCT ATCCCACAGC AAGAGCTGGA CAACAATAGT
AAGTTGACCC AGAAAGATCA GAATCCGGGA TATTAA
|
|---|
| Protein sequence | MKSTYWTSGI VAMGLFFGCS TSSLDKVNPN QVITANYYKN SAELLKGVNA VYAVWQSANL
TGREWFFLHD LRSDDVASGG GQLEAPRNQI LSGAQNPGNG VALSVWNGLY RVIHRANVVI
DNGPAVTDNA ALAKRVVAEA KFLRAMAYFD LTTFWGAVPL YTNYVTEVDG TKAKSSVDEI
YTLLTTDLLA VQTDLPATAT GADLGRATKG AAQALLARVY MQKGDYASAK TQLQSIISSG
LYKLTANYLD NFIEETEFNT ESIFEIGFSK IGDFNWDGDG NDNGANETMT RSQEYSAIGW
RNLIPSDGLL NEYENTAKGD AKTDPRLKYN FYFIGDAYNN GLNTLMESQV QGNTSVVNGV
TQKVSWRKYT AMYKNNETFY TSGINMRLIR YAEVLLMMAE AENETGNSAN AIALLNQIRA
RASVAMPPYP TANYPVNSKA EVFRAVVHEK RVEQAGEQIR NRDILRWRAQ NKLQTEPIPY
FAKGKQELLP IPQQELDNNS KLTQKDQNPG Y
|
|---|
| |