Gene Slin_5546 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_5546 
Symbol 
ID8729320 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp6756744 
End bp6757484 
Gene Length741 bp 
Protein Length246 aa 
Translation table11 
GC content48% 
IMG OID 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003390311 
Protein GI284040381 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.753854 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGACTA TACCCGAAGT TATGTCAGAT ACGCCAACTC GCGACGACCA GGACCGCACC 
GGAATGCCGG ATCACGGAAT GCCGGACCAC GGCGGCCCGT CCGGACCAGA CCATTTGTTA
CCAGACGGAG ACGCCGTCGA TCAGCCATCA GCTGATACAC CCGCTCGCCG TTATACCGAT
GAGCAGAAAT ACCAGGTTTT CAATAAGGAG TTCATGCCCC ACATTGACTC CATGTACAAT
TTTGCCTTTC GACTGACCAC CGATGAGGAC GACGCCAATG ATCTGGTGCA GGATACCTAT
CTGAAAGCAT TCAGGTTTAT TTCGTCATTT GAGCAAGGAA CTAACGCAAA AGCATGGCTG
TTTCGAATAC TGAAGAACAG CTTCATTAAC GATTATCGGA AGAAAAGTAA AGAGCCAGCA
AAGGTAGATT ATCAGGACGT TGAAACGACC TATAACTCTG AAGACGCTGA ATCCGAACAC
ACGGTCGACC TTCGGGCCGA GTCCGTTTCT GACTTGATCG GCGATGAGGT AGCCACGGCA
CTGAACTCGT TGCCTGTTGA TTTTCGAACA GTCATTATTC TCTGCGACAT CGAAGGATTT
ACGTACGAGG AGATGGCCAA AATCTTAGAT ATACCAATAG GAACCGTACG GTCCCGCCTG
CATAGAGCTC GTAACCTGTT GAAAGAAAAA TTGCGTGATT ACGCATCATC AATGGGTTAT
AATGAAGAAA GTGAAGAATA A
 
Protein sequence
MATIPEVMSD TPTRDDQDRT GMPDHGMPDH GGPSGPDHLL PDGDAVDQPS ADTPARRYTD 
EQKYQVFNKE FMPHIDSMYN FAFRLTTDED DANDLVQDTY LKAFRFISSF EQGTNAKAWL
FRILKNSFIN DYRKKSKEPA KVDYQDVETT YNSEDAESEH TVDLRAESVS DLIGDEVATA
LNSLPVDFRT VIILCDIEGF TYEEMAKILD IPIGTVRSRL HRARNLLKEK LRDYASSMGY
NEESEE