Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_5546 |
Symbol | |
ID | 8729320 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | + |
Start bp | 6756744 |
End bp | 6757484 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | |
Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_003390311 |
Protein GI | 284040381 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.753854 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGACTA TACCCGAAGT TATGTCAGAT ACGCCAACTC GCGACGACCA GGACCGCACC GGAATGCCGG ATCACGGAAT GCCGGACCAC GGCGGCCCGT CCGGACCAGA CCATTTGTTA CCAGACGGAG ACGCCGTCGA TCAGCCATCA GCTGATACAC CCGCTCGCCG TTATACCGAT GAGCAGAAAT ACCAGGTTTT CAATAAGGAG TTCATGCCCC ACATTGACTC CATGTACAAT TTTGCCTTTC GACTGACCAC CGATGAGGAC GACGCCAATG ATCTGGTGCA GGATACCTAT CTGAAAGCAT TCAGGTTTAT TTCGTCATTT GAGCAAGGAA CTAACGCAAA AGCATGGCTG TTTCGAATAC TGAAGAACAG CTTCATTAAC GATTATCGGA AGAAAAGTAA AGAGCCAGCA AAGGTAGATT ATCAGGACGT TGAAACGACC TATAACTCTG AAGACGCTGA ATCCGAACAC ACGGTCGACC TTCGGGCCGA GTCCGTTTCT GACTTGATCG GCGATGAGGT AGCCACGGCA CTGAACTCGT TGCCTGTTGA TTTTCGAACA GTCATTATTC TCTGCGACAT CGAAGGATTT ACGTACGAGG AGATGGCCAA AATCTTAGAT ATACCAATAG GAACCGTACG GTCCCGCCTG CATAGAGCTC GTAACCTGTT GAAAGAAAAA TTGCGTGATT ACGCATCATC AATGGGTTAT AATGAAGAAA GTGAAGAATA A
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Protein sequence | MATIPEVMSD TPTRDDQDRT GMPDHGMPDH GGPSGPDHLL PDGDAVDQPS ADTPARRYTD EQKYQVFNKE FMPHIDSMYN FAFRLTTDED DANDLVQDTY LKAFRFISSF EQGTNAKAWL FRILKNSFIN DYRKKSKEPA KVDYQDVETT YNSEDAESEH TVDLRAESVS DLIGDEVATA LNSLPVDFRT VIILCDIEGF TYEEMAKILD IPIGTVRSRL HRARNLLKEK LRDYASSMGY NEESEE
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