Gene Slin_5525 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_5525 
Symbol 
ID8729298 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand- 
Start bp6734172 
End bp6734723 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content48% 
IMG OID 
Producthypothetical protein 
Protein accessionYP_003390290 
Protein GI284040360 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.318812 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.150861 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGAGCA TTGTCGTTTA TTGTGCGTCG AGCCTCGGCG TTACCCCGAT TTATAATGAA 
GTAGCCATTG AACTTGGCGA AAAAATGGCA GCAAACAACG TCCGCCTTAT TTATGGCGGG 
GGTGGCTTTG GCCTTATGGG CAATGTAGCC AATGCTGTGT TAAAAAATGG GGGCGAAGTA 
ACGGGCGTAA TCCCCAACTT TCTCGCTGAT CTGGAAGTGG CTCACCAAAC TCTAACGGAG 
CTGCATTTCG TTGAAACCAT GCATGAGCGT AAGTTCAAAA TGGTACAGCT CGCCAAAGGC 
GTAATTGCCT TGCCCGGCGG TTATGGAACG ATGGACGAAT TGTTTGAAAT CCTGGCCTGG 
CGGCAACTAA AACTATACGA TGGCCCCGTC GCTATAGTCA ACACCAACGG GTTTTATGAC 
CTCATGCTAA AGCAACTAGA CCGGATGGTT GCCGACGGCT TTCTTAAGCC AGAAAACCGG 
TCTATACTGC TGGTTGCAAA CACAGTTGAT GAAGTATTAC AGATGATAAG TGAGTTCTGG 
GATAACGTTT AG
 
Protein sequence
MQSIVVYCAS SLGVTPIYNE VAIELGEKMA ANNVRLIYGG GGFGLMGNVA NAVLKNGGEV 
TGVIPNFLAD LEVAHQTLTE LHFVETMHER KFKMVQLAKG VIALPGGYGT MDELFEILAW 
RQLKLYDGPV AIVNTNGFYD LMLKQLDRMV ADGFLKPENR SILLVANTVD EVLQMISEFW 
DNV