Gene Slin_5495 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_5495 
Symbol 
ID8729263 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp6688060 
End bp6689874 
Gene Length1815 bp 
Protein Length604 aa 
Translation table11 
GC content49% 
IMG OID 
ProductGTP-binding protein TypA 
Protein accessionYP_003390260 
Protein GI284040330 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00444175 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAATCAA TTCGCAATAT AGCAATCATC GCCCACGTTG ACCACGGCAA AACGACTCTG 
GTTGACAAGA TCATCCACGC ATCGAAGCTC TTTCGGGACA ATCAGGAGTT TGGCGACCTG
ATTCTGGACA ACAATGACCT CGAGCGTGAG CGGGGTATTA CCATCGTTTC TAAAAACGTA
TCGGTACGCT ACAAAGATGT TAAAATCAAC ATCATCGATA CCCCAGGCCA CAGTGACTTT
GGTGGTGAAG TTGAACGCGT TCTGAAAATG GCCGACGGCG TTTGCCTGCT GGTCGATGCT
TTCGAAGGTG CTATGCCACA AACGCGTTTC GTGCTTGGCA AAGCCCTTCA ACTGGGCCTT
AAGCCAATCG TAATCGTAAA CAAGGTCGAC AAAGAAAACT GCCGGCCCGA AGAAGTACAC
GAGCAGGTGT TCGACCTGAT GTTCAACCTC GGTGCTACCG AAGACCAACT GGACTTCCCA
ACGGTATACG GTTCGTCGAA GCAGGGCTGG ATGGGTCCGG ATTGGAAAAC CCCAACCGAT
AACATCACCT ATCTGCTCGA TACCATCGTT GAGAACATTC CCGCTTCGCC AATAAACGAA
GGTCTGCCCC AGATGCAAAT CACATCACTG GATTATTCAG CTTTCGTTGG TCGGATCGCC
ATTGGTCGTG TACATCGCGG TACGCTGAAA GAAGGTGCTA ATATGGCCCT GGTGAAATCG
GACGGTTCGG TAAAGCGGGT TAAAATCAAA GAACTGCAAA CGTTCGAAGG CCTTGGCAAA
CTAAAAGTAA CCGAAGTTCA GTGCGGTGAT ATCTGCGCCG TGACGGGTCT GGAAGAATTC
GAAATCGGCG ATACGCTGAC CGATCTGGAA AATCCTGAAG CCCTGGAGCG GATTTCGGTG
GATGAGCCAA CGATGAACAT GTTGTTCACC ATCAACAATT CGCCCTTCTT CGGTAAAGAA
GGTAAATTCG TTACGTCGCG CCATTTGCGT GATCGTTTAT ACAAAGAGAT TGAAAAGAAC
CTGGCGCTTC GTGTAGAGGC AACGGACAGC GAAGACCGCT TCCTCGTCTA TGGTCGTGGT
ATTCTTCACC TTTCTGTTCT GATCGAAACC ATGCGTCGTG AAGGTTACGA ATTGCAGGTT
GGTCAGCCAC AGGTGCTGTA TAAAGAAGAT GAGAACGGCC ACAAACTGGA GCCCATCGAA
ACCCTCGTGG TCGACGTTCC CGAAGAGACA GCCGGTAAGG TTATCGAATT GGCAACCCAG
CGTAAAGGCG AACTGCTGAT CATGGAACCG AAAGGCGATC TGCAACACCT GGAATTTGAT
ATTCCTTCGC GTGGTCTGAT TGGTCTGCGT TCCAACGTTC TGACGGCAAC CTTCGGTGAA
GCCGTTATGA GCCACCGGTT CAAAGAGTAT CAGGAGTACA AAGGGCCAAT CCCCGAGCGG
ATCAACGGGT CGCTCATTTC GATGACCAGC GGTGCGGCTA CGGCTTATTC CATTGATAAA
CTTCAGGATC GGGGATCGTT CTTTATTGAG CCGGGTGACG AAATCTACAC AGGCCAGGTA
ATTGGCGAAC ATAACCGTCA GAACGATATT GTTGTCAATG TAATAACCGC AAAGCAGTTG
ACCAACATGC GTGCTTCAGG TTCTGATAAC AACGTGAAGA TCGCTCCGAA AATCTCATTC
TCACTTGAAG AGAATATGGA ATACATCCAG AAGGATGAAT ACCTGGAGGT AACGCCAAAG
TCGATGCGTA TCCGTAAAAT CTACCTGGAC GAGAACGAGC GGAAACGGAA CCAGAATAAA
TTTGCTATGG CTTAA
 
Protein sequence
MQSIRNIAII AHVDHGKTTL VDKIIHASKL FRDNQEFGDL ILDNNDLERE RGITIVSKNV 
SVRYKDVKIN IIDTPGHSDF GGEVERVLKM ADGVCLLVDA FEGAMPQTRF VLGKALQLGL
KPIVIVNKVD KENCRPEEVH EQVFDLMFNL GATEDQLDFP TVYGSSKQGW MGPDWKTPTD
NITYLLDTIV ENIPASPINE GLPQMQITSL DYSAFVGRIA IGRVHRGTLK EGANMALVKS
DGSVKRVKIK ELQTFEGLGK LKVTEVQCGD ICAVTGLEEF EIGDTLTDLE NPEALERISV
DEPTMNMLFT INNSPFFGKE GKFVTSRHLR DRLYKEIEKN LALRVEATDS EDRFLVYGRG
ILHLSVLIET MRREGYELQV GQPQVLYKED ENGHKLEPIE TLVVDVPEET AGKVIELATQ
RKGELLIMEP KGDLQHLEFD IPSRGLIGLR SNVLTATFGE AVMSHRFKEY QEYKGPIPER
INGSLISMTS GAATAYSIDK LQDRGSFFIE PGDEIYTGQV IGEHNRQNDI VVNVITAKQL
TNMRASGSDN NVKIAPKISF SLEENMEYIQ KDEYLEVTPK SMRIRKIYLD ENERKRNQNK
FAMA