Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_5495 |
Symbol | |
ID | 8729263 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | - |
Start bp | 6688060 |
End bp | 6689874 |
Gene Length | 1815 bp |
Protein Length | 604 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | |
Product | GTP-binding protein TypA |
Protein accession | YP_003390260 |
Protein GI | 284040330 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00444175 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAATCAA TTCGCAATAT AGCAATCATC GCCCACGTTG ACCACGGCAA AACGACTCTG GTTGACAAGA TCATCCACGC ATCGAAGCTC TTTCGGGACA ATCAGGAGTT TGGCGACCTG ATTCTGGACA ACAATGACCT CGAGCGTGAG CGGGGTATTA CCATCGTTTC TAAAAACGTA TCGGTACGCT ACAAAGATGT TAAAATCAAC ATCATCGATA CCCCAGGCCA CAGTGACTTT GGTGGTGAAG TTGAACGCGT TCTGAAAATG GCCGACGGCG TTTGCCTGCT GGTCGATGCT TTCGAAGGTG CTATGCCACA AACGCGTTTC GTGCTTGGCA AAGCCCTTCA ACTGGGCCTT AAGCCAATCG TAATCGTAAA CAAGGTCGAC AAAGAAAACT GCCGGCCCGA AGAAGTACAC GAGCAGGTGT TCGACCTGAT GTTCAACCTC GGTGCTACCG AAGACCAACT GGACTTCCCA ACGGTATACG GTTCGTCGAA GCAGGGCTGG ATGGGTCCGG ATTGGAAAAC CCCAACCGAT AACATCACCT ATCTGCTCGA TACCATCGTT GAGAACATTC CCGCTTCGCC AATAAACGAA GGTCTGCCCC AGATGCAAAT CACATCACTG GATTATTCAG CTTTCGTTGG TCGGATCGCC ATTGGTCGTG TACATCGCGG TACGCTGAAA GAAGGTGCTA ATATGGCCCT GGTGAAATCG GACGGTTCGG TAAAGCGGGT TAAAATCAAA GAACTGCAAA CGTTCGAAGG CCTTGGCAAA CTAAAAGTAA CCGAAGTTCA GTGCGGTGAT ATCTGCGCCG TGACGGGTCT GGAAGAATTC GAAATCGGCG ATACGCTGAC CGATCTGGAA AATCCTGAAG CCCTGGAGCG GATTTCGGTG GATGAGCCAA CGATGAACAT GTTGTTCACC ATCAACAATT CGCCCTTCTT CGGTAAAGAA GGTAAATTCG TTACGTCGCG CCATTTGCGT GATCGTTTAT ACAAAGAGAT TGAAAAGAAC CTGGCGCTTC GTGTAGAGGC AACGGACAGC GAAGACCGCT TCCTCGTCTA TGGTCGTGGT ATTCTTCACC TTTCTGTTCT GATCGAAACC ATGCGTCGTG AAGGTTACGA ATTGCAGGTT GGTCAGCCAC AGGTGCTGTA TAAAGAAGAT GAGAACGGCC ACAAACTGGA GCCCATCGAA ACCCTCGTGG TCGACGTTCC CGAAGAGACA GCCGGTAAGG TTATCGAATT GGCAACCCAG CGTAAAGGCG AACTGCTGAT CATGGAACCG AAAGGCGATC TGCAACACCT GGAATTTGAT ATTCCTTCGC GTGGTCTGAT TGGTCTGCGT TCCAACGTTC TGACGGCAAC CTTCGGTGAA GCCGTTATGA GCCACCGGTT CAAAGAGTAT CAGGAGTACA AAGGGCCAAT CCCCGAGCGG ATCAACGGGT CGCTCATTTC GATGACCAGC GGTGCGGCTA CGGCTTATTC CATTGATAAA CTTCAGGATC GGGGATCGTT CTTTATTGAG CCGGGTGACG AAATCTACAC AGGCCAGGTA ATTGGCGAAC ATAACCGTCA GAACGATATT GTTGTCAATG TAATAACCGC AAAGCAGTTG ACCAACATGC GTGCTTCAGG TTCTGATAAC AACGTGAAGA TCGCTCCGAA AATCTCATTC TCACTTGAAG AGAATATGGA ATACATCCAG AAGGATGAAT ACCTGGAGGT AACGCCAAAG TCGATGCGTA TCCGTAAAAT CTACCTGGAC GAGAACGAGC GGAAACGGAA CCAGAATAAA TTTGCTATGG CTTAA
|
Protein sequence | MQSIRNIAII AHVDHGKTTL VDKIIHASKL FRDNQEFGDL ILDNNDLERE RGITIVSKNV SVRYKDVKIN IIDTPGHSDF GGEVERVLKM ADGVCLLVDA FEGAMPQTRF VLGKALQLGL KPIVIVNKVD KENCRPEEVH EQVFDLMFNL GATEDQLDFP TVYGSSKQGW MGPDWKTPTD NITYLLDTIV ENIPASPINE GLPQMQITSL DYSAFVGRIA IGRVHRGTLK EGANMALVKS DGSVKRVKIK ELQTFEGLGK LKVTEVQCGD ICAVTGLEEF EIGDTLTDLE NPEALERISV DEPTMNMLFT INNSPFFGKE GKFVTSRHLR DRLYKEIEKN LALRVEATDS EDRFLVYGRG ILHLSVLIET MRREGYELQV GQPQVLYKED ENGHKLEPIE TLVVDVPEET AGKVIELATQ RKGELLIMEP KGDLQHLEFD IPSRGLIGLR SNVLTATFGE AVMSHRFKEY QEYKGPIPER INGSLISMTS GAATAYSIDK LQDRGSFFIE PGDEIYTGQV IGEHNRQNDI VVNVITAKQL TNMRASGSDN NVKIAPKISF SLEENMEYIQ KDEYLEVTPK SMRIRKIYLD ENERKRNQNK FAMA
|
| |