| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_5445 |
|---|
| Symbol | |
|---|
| ID | 8729212 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 6620936 |
|---|
| End bp | 6624547 |
|---|
| Gene Length | 3612 bp |
|---|
| Protein Length | 1203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | FG-GAP repeat protein |
|---|
| Protein accession | YP_003390211 |
|---|
| Protein GI | 284040281 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCAT CTTTCCGAAG CATCGGTTGG GTAGTGCCCA TCGTGTTTCT GTTTTTACTG
ACCGGCTGCC GTGAGAAGCC CCTTTTCGAG CGGCTCGATT CGTCGGATAC CGGCATCACC
TTCGCGAATA CCATCACCGA CAGCGATACG CTTAACATCC TCAACTACCA GTACATCTAC
AACGGTGGCG GTGTGGGGGT CGGCGATTTT AACGGCGACC AGAAACCGGA TGTTTTCTTT
GCCGGAAATC AGGTGCCAAA CCGGTTGTAT CTCAATGAGA CCGAAACAGG CGGAAGTCTC
CATTTTAAGG ACGTTACGCA GGCTGCTGGT GTCGGTGGAA ATGGCCGCTG GTGCTCGGGC
GTGTCTGTGG TGGATGTCAA TGCCGATGGA AAACTGGACG TATACGTCTC CACAACCCTT
CACAAAAAAG CCGCCAACCG GACCAACCTG CTCTACGTCA ACCAGGGGAA TGATGGCGAT
GGCGCGCCGA AATTCCGCGA AATGGCGGCC GAATACGGCA TTGCGGATAC TACGTTTTCG
ACCCACTCGG CCTTTTTTGA TTACGACAAC GACGGCGACC TGGACCTGTT CGTACTGGTC
GATCAGATTG ACGACCCCAA GAACCCAACT AACTTACGGG AGCGGGTCAA CGATGGCACA
TCGCCCAACG TCGACCGGCT TTACCGGAAT GATTTCGATT CGACCCGCGG TCATGCCTAT
TTCACCGATG TGACACTAAA GGCCGGTTTA CTGGCCGAAG GCTTCGGGTT AGGAGTAAAC
ATCTGTGACA TCAACCGCGA TGGCTGGAAG GATATTTACG TTACCAACGA CTTTGCCAGC
AGCGATGTGC TTTACGTTAA TAACCATGAC GGGACGTTTA CGAACCGCGC ACATGAGTCG
TTCAAGCATA CCAGCTCATC GGCCATGGGG AATGATGTGG CGGATATTAA CGGCGATGGC
CTGGCCGACA TTATTGTAAT GGATATGTTG CCCGAAGATA ACCTTCGCAA GAAAAGCCTG
ATGGGACCTA GCAGCTATTA TGCCTATCAG GAATGGGACC GGCTGGGCTA CGAACACCAG
TACGCCCGCA ACACACTTCA GCTAAATCAG GGGGTACGGC CTCCCGGGGT ACGGCCTCCC
GGGGTACGGC CTACCGGGGT ACGGCCATCC GGGGTGCGGC CTCCCGATAC GGCAAACGCG
AACATGCCGG TTTTCAGTGA AATAAGTATG CTGTCTGGTG TGGCCGAAAC AGAATGGAGC
TGGTCGCCGT TATTGGCTGA TTTTGACCAG GATGGCTACC GGGATCTGCT GGTAACCAAC
GGCTTCCCCC GCGACATTAC CGACCGCGAC TTCACGAACT ATTACAGTTC GGTGAATAGC
TACCTGACCG ATGCGCTTCG GAAAGAGTTG ACCGAGAAAA TGCCGAGAGT AAAGGTCAGT
GATTATGCCT ATCGCAATCG GGGCGACGCC ACGTTTGAAA ATGTAACCGA ACTCTGGGGC
ATGAGCGAAC CGAACTTCGC CAATGGGGCC GTCTATGCCG ATTTCGACGG CGATGGTGAT
CTCGATTATG TGGTCAGTAA TATCGACGAT GAGGCTTTCG TCTACCGCAA TACCCTGGCC
GATAAAAAGA CGGAACAGGC ACATTACCTC CGGATTCAGT TTAAGGGCGA TGGTGCTAAC
CCAATGGGCC TGGGTGCAAT AGTCGAATAC GAACTGTCCG ATGGCCGGAA AGAGTTTTAT
GAGCATACGC CCTACCGCGG GTTCCTGTCG AGCGTTGACC CCATTGCCCA CTTTGGCCTT
GGCAAGAATA CGACCATCAG GAGCCTGAAA GTGACCTGGC CCGGCGGTCG GGTGCAGATT
CTGCCGAGCG TCAACGCCGA CCAGACGATC ACACTAAAAG CGACTGATGC CAAACCCGGC
GAGACCAACG AGACGATTTC GGCACCTAAA ACGCTGGTGC AGGACATTAC GGCTGAGTTA
GGGCTGACCT ACAGGCACGA AGAGAACGAC ATTATTGATT TCAACGGGCA AAAAACCCTG
TTGCATAAAC TCACCGAGTA TGGCCCGGCG CTGGCCGTGG GCGACATAAA CGGCGATGGC
CTGGCCGATA TGGTTGTTGG GGGTAGTTCC AAATATTCGA CAGAGTTGCT GTTGCAACAG
CCGTCGGGCC GCTTCGTGCT GAAACCAATG CCGGCCAAAT TATCGGAAGA TGCCGGGCTG
CTGCTCTTTG ATGCCGATGC CGATGGTGAT CTCGATCTTT ACATTGCCAG TGGAAGTCCC
GAATTTACGG CCGAGCAGAT GAAAGAGACT ATGCGTCACC GGCTTTACAC GAACGATGGC
AAAGGCAACT TCACGCTGGC TCCCGATGCA CTGCCCGACT TTCGGGTGAA TGGCTCCTGC
GTGAAAGCGG CTGATGTTGA TAAAGACGGT GATCTCGATC TGTTCGTTGG TGGACGGGTT
GAACCCAACA AATACCCGAT GGGCGTTCCG AGCTACCTGT TGCGCAATGA CAGTCAGAAA
GGACGTCCGA AATTCACGGA TGCTACCGCG CAGGTGGCAC CAACGCTCAC CAAGGCGGGC
CTGACCTGCG ATGCCCTCTG GACCGATTAT GATAATGATG GTTATGTTGA CCTGATGCTG
GCCAGCGAAT GGGCACCCAT TACCATGCTT CACAATGTGA AGGGTACGTT GAAGCCCCTC
GAAAATAGCG GACTCAACGA TAAACTTGGC TTCTGGAACT CTATAACCCC CGGCGATTTC
GACAACGACG GCGACATTGA TTACCTGGTG GGGAACACCG GCCTGAACAC CTTACTCCGT
GCCAATGCCG AACAGCCGGT ACGTATCTAT GCCGGTGACT TCGACAACAA CGGATTCTAC
GATGCGTTCA CATCGGTCTA TTTCAAAAAC GCCAAAGGTC AGTACGAAGA GTATCCTTAT
TTCGGCTGGG ATGATATGGT GAAGCAGATG ATCGGCATCA AAAAACGGTT CGTGAATTAC
GCCCCGTTTG GCGCAGCTAC TATGAACCAG ATACTAACCG AAGAGGAACG TGCTCAGGCG
CTGAAATTAA CGGCAAACTA CATGCAGAGC AGTTATGTCG AGAATAAAGG GAACGGCAAG
TTTGAGGTAA GACCATTACC CGTCATGGCG CAAATGGCCC CGCTCTTTGG CATGCTGGCG
CAGGATGTTG ACGGCGACGG GAATCTGGAT GCCGTGCTGG TTGGCAACGA ACACGGCAGC
GATCTGGTAG CCGGACGCAT GGATGCCTTT AATGGACTCG TGCTGAAAGG CGACGGCAAG
GGTGGATTTA AGCCGCTAAC CATTGCTCAG TCTGGCTTCT ACGCACCGGG TAACGCCAAA
GCGCTCGTCA GCCTGCCCGA TGCCCAGGGG CATCCGCTGC TGGCCGTTAC CGAAAATAGA
GGCCCGCTGC GGCTGTTTGC CGTGCAACAG CCGCAAACGT TCACCCCGGT CGATGCGGCT
ACTACAGCGG TTACGGTGCG GTTGAAAAAC GGGAAAGTTC GTCGGCAGGA AGTTCCGTTC
GGCACATCCT TTTACGGGCA GTCAGCGCGG GGTGTGTGGT TGCTTCCGGG CGAACAGCTC
GTTAAAAAGT AA
|
|---|
| Protein sequence | MKSSFRSIGW VVPIVFLFLL TGCREKPLFE RLDSSDTGIT FANTITDSDT LNILNYQYIY
NGGGVGVGDF NGDQKPDVFF AGNQVPNRLY LNETETGGSL HFKDVTQAAG VGGNGRWCSG
VSVVDVNADG KLDVYVSTTL HKKAANRTNL LYVNQGNDGD GAPKFREMAA EYGIADTTFS
THSAFFDYDN DGDLDLFVLV DQIDDPKNPT NLRERVNDGT SPNVDRLYRN DFDSTRGHAY
FTDVTLKAGL LAEGFGLGVN ICDINRDGWK DIYVTNDFAS SDVLYVNNHD GTFTNRAHES
FKHTSSSAMG NDVADINGDG LADIIVMDML PEDNLRKKSL MGPSSYYAYQ EWDRLGYEHQ
YARNTLQLNQ GVRPPGVRPP GVRPTGVRPS GVRPPDTANA NMPVFSEISM LSGVAETEWS
WSPLLADFDQ DGYRDLLVTN GFPRDITDRD FTNYYSSVNS YLTDALRKEL TEKMPRVKVS
DYAYRNRGDA TFENVTELWG MSEPNFANGA VYADFDGDGD LDYVVSNIDD EAFVYRNTLA
DKKTEQAHYL RIQFKGDGAN PMGLGAIVEY ELSDGRKEFY EHTPYRGFLS SVDPIAHFGL
GKNTTIRSLK VTWPGGRVQI LPSVNADQTI TLKATDAKPG ETNETISAPK TLVQDITAEL
GLTYRHEEND IIDFNGQKTL LHKLTEYGPA LAVGDINGDG LADMVVGGSS KYSTELLLQQ
PSGRFVLKPM PAKLSEDAGL LLFDADADGD LDLYIASGSP EFTAEQMKET MRHRLYTNDG
KGNFTLAPDA LPDFRVNGSC VKAADVDKDG DLDLFVGGRV EPNKYPMGVP SYLLRNDSQK
GRPKFTDATA QVAPTLTKAG LTCDALWTDY DNDGYVDLML ASEWAPITML HNVKGTLKPL
ENSGLNDKLG FWNSITPGDF DNDGDIDYLV GNTGLNTLLR ANAEQPVRIY AGDFDNNGFY
DAFTSVYFKN AKGQYEEYPY FGWDDMVKQM IGIKKRFVNY APFGAATMNQ ILTEEERAQA
LKLTANYMQS SYVENKGNGK FEVRPLPVMA QMAPLFGMLA QDVDGDGNLD AVLVGNEHGS
DLVAGRMDAF NGLVLKGDGK GGFKPLTIAQ SGFYAPGNAK ALVSLPDAQG HPLLAVTENR
GPLRLFAVQQ PQTFTPVDAA TTAVTVRLKN GKVRRQEVPF GTSFYGQSAR GVWLLPGEQL
VKK
|
|---|
| |