| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_5443 |
|---|
| Symbol | |
|---|
| ID | 8729210 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 6617954 |
|---|
| End bp | 6619345 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_003390209 |
|---|
| Protein GI | 284040279 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0993936 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.863947 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCCGCT ACAATCGCAA ATGGGCCGTT TTTTTCGCTA TCATTGTGAA ATACCCCAAT
CCGAAACGTT GCCCTCACCG CCCGACTATG GCCCAAAATC AACTCAAGAA ATTATTAGGC
GTCGGTTTCG GCGTGGCCGT TACGATTGGC GGCACTATTG GCACCGGTAT TTTGCGGAAG
CCTGGTCCGA TTGCACAGGA CATCGGCAAC CCGGTTTTGA TCATTGCCGT CTGGCTGATT
GTCGGTGTGT ATGCACTGGC GGGGTCGCTC TCGGTTATGG AACTTGGCAC GATGCTGCCT
AAAGCCGGTG GCTGGTATGT GTATGCCCGG CGGGCGTTTG GCAATTACGC GGGCTTTATC
ATCGGCATCA GCAGCTGGCT CGGCAGCGTG TCGGCCATGG CCTTTGGGGC GGCTGTTATG
AGCGAATACA TCAGCCTGAT GGCCCCTTCT ATGGTTGATT ATCAAAAGAT TATTGCCATC
AGTATTCTGG CTGCTTTTGT GGCCTTTCAC TCCATTGGCG TACGCCTGGC GAGCCGGGCG
CAGGAAGTCA TGAGCGTGCT GAAGGGCGTT GGCCTGCTGG TGTTCGTTGT CGTTTGCTTC
GTCGTCAAAC CCGATCAGCC GGTGGCGGCT TCTGCCGAAA CCATCCGACC ACTGGCCGAA
GGGGGCGTTT GGCTGGGTGT GCTGGCGGCT CTACAAGCCG TTTTTTATAC CTATGATGGC
TGGCACACCG CGGCCTATTT CACCGAAGAA GACGTCGACC CCAGCCGGAA CCTCCCCCGT
TCCATGATTA GCGGGGTGCT GCTGATTATC GGTATTTACG TACTGGTCAA TCTGGCCCTG
CTGTACGTGT TGCCCGTGTC AGCATTGGCG GGTACGAAAC TTCCGGCGGC CGATGCCGTG
CAGGTGCTGT TCGGGCCGGG CAGTGCGCAG GTCGTTACTT TTCTGCTGAT GATTTCCATT
ATGGGGATCA TCAACGCCCA GATCATGTTC AACCCCCGTG TTATCTTCGC GATGGGCCGC
GACGGGCTCT TTTTCCGCTT CGTGACCCAG GTCAATTCGG GCGGTACCCC ATTGAACGCC
ACGCTGCTGA CAGCCGGTGC TTCCATCCTG ATGATTCTGA CCAACACTTA CAGCAAACTT
TCAGACATTG CCACCTTCTT TTTTGTGCTC TGTTACGCGT CGGCTTTTGC GGCCCTGATT
CGCCTGCGCC AAACCGAGCC GGAACTTGAC CGTCCCGTAC GTGCCTGGGG CTACCCCTTT
TCAACCTGGA CGCTGCTCCT TGCCTCCTTG GCTTTTCTGT TTGGCGTAGT TATCGGCGAT
TTTTCCAGCA GTATGTATGC ACTCGGCTTT ATTGCCGTAA GCTACCCCGT ATATTTATTC
ATAAAAAAAT AA
|
|---|
| Protein sequence | MGRYNRKWAV FFAIIVKYPN PKRCPHRPTM AQNQLKKLLG VGFGVAVTIG GTIGTGILRK
PGPIAQDIGN PVLIIAVWLI VGVYALAGSL SVMELGTMLP KAGGWYVYAR RAFGNYAGFI
IGISSWLGSV SAMAFGAAVM SEYISLMAPS MVDYQKIIAI SILAAFVAFH SIGVRLASRA
QEVMSVLKGV GLLVFVVVCF VVKPDQPVAA SAETIRPLAE GGVWLGVLAA LQAVFYTYDG
WHTAAYFTEE DVDPSRNLPR SMISGVLLII GIYVLVNLAL LYVLPVSALA GTKLPAADAV
QVLFGPGSAQ VVTFLLMISI MGIINAQIMF NPRVIFAMGR DGLFFRFVTQ VNSGGTPLNA
TLLTAGASIL MILTNTYSKL SDIATFFFVL CYASAFAALI RLRQTEPELD RPVRAWGYPF
STWTLLLASL AFLFGVVIGD FSSSMYALGF IAVSYPVYLF IKK
|
|---|
| |