Gene Slin_5309 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_5309 
Symbol 
ID8729074 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp6473352 
End bp6474983 
Gene Length1632 bp 
Protein Length543 aa 
Translation table11 
GC content56% 
IMG OID 
Productamidohydrolase 
Protein accessionYP_003390077 
Protein GI284040147 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.700694 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.749654 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATACGAC CTCTCACCCA CCTGGCTTTT ATTCTTCACT TTACATTCTT CATTATCCAT 
TCCTTATCGG CCCAGGTAGA AAAGTCTCCG CCCCGGCACG AAGGCGATGG CCCCTTTGGT
AAACTCATCA TCCGGGGTGT TACGCTCGTT AATAGTACCG GTGCCCCACC CGTTGGGCCG
ATGGATATTG TGGTCGAGAA AAACCGGATT ACGCAAATCA GGCAGGTAGG CTATCCCGGC
GTGCCGATCG ACCCGAAAGG CCGTCCGCAG GCATCGCCCG GCGACAAAGA GCTGAACTGC
GAAGGTATGT ATCTGATGCC CGGCTTCATT GATATGCACG GCCACATTGG CGGCCAGGCA
CAGGGTGCCA GTGCCGAGTA TGTCTTTAAA CTCTGGCTCG GGCACGGCAT TACCACCATC
CGCGACCCAT CGTGCGGCAA TGGCCTCGAC TGGGTACTTG AGCATCGCGC CAAAAGTGAC
CGGAACGAAA TTACCGCTCC CCGCATTAAA GCGTACACCG TTTTCGGGCA GGGGGCCAAA
GAACCCATCA GCACCGTAGA GCAAGCCCGC GCCTGGGTAC AGCAAAACGC AAAAAAAGGG
GCCGATGGCA TCAAATTTTT TGGTGCAGAA CCTAATATAT TCCGGGCAGC CCTGGAAGAA
AACAAGAAGC TGGGATTGCG TTCGGCCTGC CACCACGCGC AGCTGGAAGT AGCCCGAATG
AATGCACTGG CAACGGCCAA AGCCGGTTTG ACCTCCCTCG AACACTGGTA CGGTCTGCCC
GAAGCCCTGT TCGACGACAA GACGGTTCAG AACTACCCCG CCAATTACAA CTACAACAAC
GAACAGAACC GCTTTGAAGA AGCCGGGAAC CTCTGGCAAC AGGCCGCCAA ACCCGGCACC
GACCGCTGGA ATAAGGTGAT GGACGAACTC ATTGGGCTGG ATTTCACCCT CGACCCGACT
TTCAACATTT ACGAAGCCAA CCGGGAGCTG ATGCTGGCCC GGCGCGCTGA GTGGCACGAC
GACTACACGA TGCCAAGCCT GTGGCGTTTC TACGGCCCGA GCCGGATTTC GCACGGGTCG
TACTGGCATT CGTGGGGTAC GGAGCAGGAG GTGGCCTGGA AGAAAAACTA CCAGCTTTGG
ATGGCGTTTA TCAACGAATA CAAAAACCGG GGCGGGCGCG TAACGGCGGG TTCGGATTCG
GGCTTTATTT ACCAGCTTTA CGGCTTTGCC TACATCCGCG AACTCGAACT CCTCCGCGAA
GCCGGTTTCC ACCCACTCGA AGTAATCCGG GCGGCCACCC TGAAAGGTGC CGAAGCCCTC
GGCATGGCCG ACCAGATCGG CTCGGTTGAA GTCGGCAAAC TCGCCGATTT TGTCATTGTC
GACCAGAATC CGCTCGCCAA CCTGAAGGTA CTATATGGTA CGGGGGCTAT TCACCTGAAC
GACAAAAACG AAGTAGAGCG CGTTGGCGGA GTTACCTACA CCGTAAAAGA CGGCGTGGTT
TATGACGCGA AGAAGCTACT GGCCGATGTT CGGAAACTGG TAGCCGATGC TAAGCAAAAA
GAGAATTTCG AGATCACGCA GCCCGGCGTT CCGGCCAAAG CGGGCAAAGT ATCGGGTGGT
GCGAAGAACT AA
 
Protein sequence
MIRPLTHLAF ILHFTFFIIH SLSAQVEKSP PRHEGDGPFG KLIIRGVTLV NSTGAPPVGP 
MDIVVEKNRI TQIRQVGYPG VPIDPKGRPQ ASPGDKELNC EGMYLMPGFI DMHGHIGGQA
QGASAEYVFK LWLGHGITTI RDPSCGNGLD WVLEHRAKSD RNEITAPRIK AYTVFGQGAK
EPISTVEQAR AWVQQNAKKG ADGIKFFGAE PNIFRAALEE NKKLGLRSAC HHAQLEVARM
NALATAKAGL TSLEHWYGLP EALFDDKTVQ NYPANYNYNN EQNRFEEAGN LWQQAAKPGT
DRWNKVMDEL IGLDFTLDPT FNIYEANREL MLARRAEWHD DYTMPSLWRF YGPSRISHGS
YWHSWGTEQE VAWKKNYQLW MAFINEYKNR GGRVTAGSDS GFIYQLYGFA YIRELELLRE
AGFHPLEVIR AATLKGAEAL GMADQIGSVE VGKLADFVIV DQNPLANLKV LYGTGAIHLN
DKNEVERVGG VTYTVKDGVV YDAKKLLADV RKLVADAKQK ENFEITQPGV PAKAGKVSGG
AKN