| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_5230 |
|---|
| Symbol | |
|---|
| ID | 8728996 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 6382546 |
|---|
| End bp | 6386214 |
|---|
| Gene Length | 3669 bp |
|---|
| Protein Length | 1222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | PKD domain containing protein |
|---|
| Protein accession | YP_003390001 |
|---|
| Protein GI | 284040071 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.172686 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAATCT TTAGTAAGCA TATTCGGGTA GTTGGACTCT GGGCCGTGCT GTTGTTGCTG
GCGGGGTCAA CTGTGGCCTG GGCACAAACA AGCACGGGTT TTAAAGTCAG CGGAAAACCA
TGTGTACCGG ACCAGGAGTG TAGGGCTGAC TCTGTTACGT TTACAGATAG TGTGTTAAGG
GGGGTAACAA CTCGTGTATG GAACTTTGGC GATGGAACAA CAGTCACCAA ACAACGGGAC
TCGGTGGCCA GACACGTGTA TCAACAGGCC GGCACCTATA CCGTTACACT GACCCGAACG
GTTAACGGAA CCATACAAAC GGCGGACTAC CGCATTACCA TCAACAACCG GCCACGTCCC
TTTGCAAACT GGCGAACGGA CACCACTATT TGTAAAGGCG AAAAAATTAC GCTTGACCCT
TATGCCGGTG GCTCTCAGCC AGGGTATAAG TACATATGGT ATCCCAAAGG CGATACAACC
CAGAGCATAC AGGTCGACAG CTCCGGCTGT TATTCGGTCG AAGCGATTAG CCCCAGTGGC
TGCTCCTATC AGGATCGGAT CAACGTCGAT GTATGCGGAG AAAAGAAAGA ATCGCAGGGG
GTGAAGTGGT ATTTTGGGCA GAATGCCGGT CTGGATTTTA GTGGTGGTGG GACACCCAAA
CCCATTACTG ATGGTAGTCT GAGTACGATA GAAGGGTCAT CGTCCATTGC GAATACTAAA
GGTGTACTAC TCTTCTATTC TGATGGTATT ACCATTTTTG ATAAGAATGG TAAGCCTATG
AAATCGCTTG TGCCCGGCGA TACGTTGACC ACGCAGAAGC CTTTGGATGG CAGCAAGAAC
TCAACACAAT CAGCGTTGAT CGTGCCAAAG CCTACTTGCC GGGGTTGTGA GTACCTATAT
TATGTGTATA CGACCTCCGA GATTCGGGGC CAAAAAATAT TGACGTATAG TGTGGTCGAT
ATGCGTCAGA ATGGGGGCAA AGGGGCTATT GTTGAAAAAA ATATTCCCTT GTCCAATCAA
AGTACTGAGC AATCGGCATC GGTTGCCAAC ACCCGCGATT CGACTTACTG GGTGATCACC
CGAAAATACG GGACAAACCA GTTCGAAATT CGACACCTTA CTCGCGCTGA AGACCCTATT
GTTACTACCT TCAGCGGGGG GCAAGCCATT GACTCACTTA ATAATGCCGA AGGATATATA
AAAATCGGAC CTGCCGACAC AACAGGCGGG AATCAAGGGA ATCGCCCAAT GGCAGTCGTT
ATTCCAGGTC CGCCCAAGAA CTCCGTTGAT CTTTATACTT TTAATGACTC AACGGGTAAA
ATGACGTTCA ATCGAACGCT CGATTTAGGC CCGGCACCAC CCAAAGCATA CGGCGTTGAG
TTTTCACCTG ATGGAAAGAG TCTATACGTT ACGATGCTGG CTGATACCAA CGCCGACGGT
AGCCTGAAAG GTGCTTCTTA CATTCTGAAA TATGACCTGA ATCAGCGAGA CTCATTGCTT
ACTCAGTCAA AGACAGTTGT CGACAGCAGT ACTACCCGAC AGTATGGGTC CCTCCAGATC
GGGCCCGATG GTCGCATTTA TGTGGCCGTC AAGGGAAGTT CTTCCCTAGG AACCATCGAA
AATCCAAACG GCGGTTTGCT GGATAGCCTG ATTTTTAATC CATCAGGCCA GTCGCTAGGT
GGCAAAACGA GCCAGTTAGG CTTGCCGAAT TTAGTAGCTA ATTTCAACGA CCAGTCGAGT
GGGCCGGGGC TAACCTACTC GGATACCTGC GCGAATCAAC CAACCGTATT CCAGGTTAGT
CCGAACTGTC CGAAACTGAA AGAAACATAC ACCCTGAATT TTGGTGATGG AAGTCGACCA
ACGTCAACGA CATCGACGCA ACCCATTACA CATACGTATA CAAAACCGGG TTCGTATACG
GTGGCGTTGT CAATTATTAC GAGAACAAGC ACGGGCAACA TTTGCCAAAC ATTTGACAGT
ACCTACGCAC TAACTATTTT GGAAACCCCG CCTGATATAA AGCTGGGTGC CGATACAGCT
ATCTGTAATA AACAAGGCAT AACCCTCGAC ATAAAAGTAC AGGCAAAGGT ATATGTCTGG
GTGGTCAATG GGGCCGTTGT CAGTAGGCAA CGGACCCTAA CCCTGACGAG GCCCGGTTAC
TATATAGCCG TTGGTTTAGC CGCTAATGGC GAGTGCTTCA AAAGCGATAC CATTGAGGTG
CAGATAAAGC CAACGCCCTC GCTCAACCTT GGGCCGGATA CCGTCTTTTG TTACCGATCT
AACATCCCGG TTTCTGTGCC CCAGTTAACC TGGACACAAT TTCAATGGAG CAACGGTGCG
ACTACAAAAG AAATCTCGGT GAATACAACC GGCGTATATT CCGTAACTGC CCAGTCGACC
GTCAACGGAA CGACCTGTGT TAATTCAGAC ACAATTCGGG TTACGGAGTT ACCTAAGATC
AGAGTGCAGG CGGCTTTGAC CGGCCCCAAA GCCTGTACAT CGACCGACGG CTCTATTGTT
CTAACAACTA CTCCAGCGGG TAATTACCGA TACGTTTGGA CAGGTATAGA TGGAGTTACG
TTCGGGGATG GTTCGAATCA GCAATCGAAT CTCGCTGAAG GTGGTTATAA AGTCAATGTA
ACCGATACCG TACATACATG TAAAATAGAC ACGGTCTTTG GGCTGAAATC ACCGGCCAAC
CAGCTAAGGC TTACTCCTAA TGTAAAAGAC GCGTTGTGTG CCGTGCCGAA TAGCGGCACC
ATTACCCTGA CGGTAACCGG CGGAACCCCG GCGAGCTACG CCTGGCTGGA TGCAGCCAGT
AAAGTAGTAT CCACAACGGC TGTGTTTGGA CAAGCCGCAC CAGGACTATA CACGGTGCAG
GTGGTTGATA TTAATGGCTG TAAAGCCCTT AAAGACAGCA TAAAGGTAGG GCTCGATAGT
ACAGGCTTTG CCCGGCTGGG CCCCGATACA CTCAAATGCA ATGGCCTCGC CGTAGCACTT
GTGCCACTCA CAGGCGACAT ACCCGGCAAT GTATATCAAT GGAGTACGGG AGCCAATACG
CCAAGTATTT CTGTAACGCA GCCAGGTTCG TATAGCCTTG TTCTGCGAAA TACCCTCAAT
GGCTGTGTGG GCCGAAGCAG TATTCGCGTG GGCGACCGGC CACCACCAGC GTTTTCATAT
ACCCAGAAGG CGGCCCTGTG TGAGGGAGAT AAGGAAACAA CGACACTTTC AGCCAGTGGC
GCTGCCGGAC TGTCGTATTT GTGGGTAGGG CGTAATGACA CAACCAAAAC CATAACGGTT
CAGCGGGCAG GCGACTATCC CATTCGAGTT ACGGACCCCC TGGGCTGTAC GGCTACGGCG
GTTGCCAAAG TCCTGAATCT GTGCGAGCCA CGCGTAAATG TGCCGGATGC GTTTACACCG
AACAACGATG GTATGAACGA CCTGCTCCAG GTATTTACGG CCTACATTAC CGACTATGAA
TTCCGGATAT ACAACCGCTG GGGCGAAGTC ATTTTTTCCA GCAATAATCC CGAGCAAAGA
TGGGATGGAA CGTACAAAGG CAGTACCTAT CCATCCATGA TTTACCCGTA TATTGTTATC
TATAAAAGTG AGTTCTTTCC CGAACGAGAC AGGGTTGTCA AGCGAGGTTC TGTACTACTG
ATTCGCTAG
|
|---|
| Protein sequence | MSIFSKHIRV VGLWAVLLLL AGSTVAWAQT STGFKVSGKP CVPDQECRAD SVTFTDSVLR
GVTTRVWNFG DGTTVTKQRD SVARHVYQQA GTYTVTLTRT VNGTIQTADY RITINNRPRP
FANWRTDTTI CKGEKITLDP YAGGSQPGYK YIWYPKGDTT QSIQVDSSGC YSVEAISPSG
CSYQDRINVD VCGEKKESQG VKWYFGQNAG LDFSGGGTPK PITDGSLSTI EGSSSIANTK
GVLLFYSDGI TIFDKNGKPM KSLVPGDTLT TQKPLDGSKN STQSALIVPK PTCRGCEYLY
YVYTTSEIRG QKILTYSVVD MRQNGGKGAI VEKNIPLSNQ STEQSASVAN TRDSTYWVIT
RKYGTNQFEI RHLTRAEDPI VTTFSGGQAI DSLNNAEGYI KIGPADTTGG NQGNRPMAVV
IPGPPKNSVD LYTFNDSTGK MTFNRTLDLG PAPPKAYGVE FSPDGKSLYV TMLADTNADG
SLKGASYILK YDLNQRDSLL TQSKTVVDSS TTRQYGSLQI GPDGRIYVAV KGSSSLGTIE
NPNGGLLDSL IFNPSGQSLG GKTSQLGLPN LVANFNDQSS GPGLTYSDTC ANQPTVFQVS
PNCPKLKETY TLNFGDGSRP TSTTSTQPIT HTYTKPGSYT VALSIITRTS TGNICQTFDS
TYALTILETP PDIKLGADTA ICNKQGITLD IKVQAKVYVW VVNGAVVSRQ RTLTLTRPGY
YIAVGLAANG ECFKSDTIEV QIKPTPSLNL GPDTVFCYRS NIPVSVPQLT WTQFQWSNGA
TTKEISVNTT GVYSVTAQST VNGTTCVNSD TIRVTELPKI RVQAALTGPK ACTSTDGSIV
LTTTPAGNYR YVWTGIDGVT FGDGSNQQSN LAEGGYKVNV TDTVHTCKID TVFGLKSPAN
QLRLTPNVKD ALCAVPNSGT ITLTVTGGTP ASYAWLDAAS KVVSTTAVFG QAAPGLYTVQ
VVDINGCKAL KDSIKVGLDS TGFARLGPDT LKCNGLAVAL VPLTGDIPGN VYQWSTGANT
PSISVTQPGS YSLVLRNTLN GCVGRSSIRV GDRPPPAFSY TQKAALCEGD KETTTLSASG
AAGLSYLWVG RNDTTKTITV QRAGDYPIRV TDPLGCTATA VAKVLNLCEP RVNVPDAFTP
NNDGMNDLLQ VFTAYITDYE FRIYNRWGEV IFSSNNPEQR WDGTYKGSTY PSMIYPYIVI
YKSEFFPERD RVVKRGSVLL IR
|
|---|
| |