| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_5198 |
|---|
| Symbol | |
|---|
| ID | 8728964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 6343827 |
|---|
| End bp | 6344927 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_003389969 |
|---|
| Protein GI | 284040039 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.197197 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAC TTCGCATCCT GATTCCTCTT CTGCTGTTGG TTGCCGTGTT CGTCTTTTTC
GGTGTATTGC CCCGAATGCG TAATACGCAG GAACTGAAAG CGGCCGTTTC GGAGGAAAAG
AGCCGTGACC CCATCGTGAA CGCGGTGTCC CTGAAACACT CGTCCGATAC AACCGGGCTT
ACTTTGCCCG GCCAGATTCA GCCATTCCGG CAAACGCCCC TCTACGCCCG TACGCAGGGC
TTTCTGCGTC GGTGGTACGT TGACATCGGC GGACAGGTGA AACAGGGCCA ATTACTAGCT
ACCATCGACG TGCCCGAACT GGACCAGGAT ATTGCCCGCG CCAAAGCCGA TCTGCAACTG
GCGAAAATTA ACCTCGAACG GCTGCAAAGT GTTGAGTTGC CCGGCGCCAT TGCCCGGCAG
GATGTTGATA CGCGCCGGTC GGCGGTAACG GTGGCAGAGG CTAACGTGGG CCGATTACAG
GCGCTGAAAA ACTTACAGCA GATCCGGGCA CCCTTCAGCG GTATCATCAC CAGTCGGACG
GCCGAAAACG GAACACTGGT ATCGCCGGGA ACTGGGCAAC CCTTGTTCAC CCTCTCGGAA
GTGGGCTCGC TGCGGGTATT TGTCGACGTG CCGCAAACGT ATTACCAATA CATGAAGATC
GGGATGCCCG CTACGGTTAC TATTCCTGAG CTGAAAAATC AGACCTTCCA GGGAAAAGTT
ATGCATACGT CGGGGGCGTT ACGGAGCGAT TCCCGAACGC TGCTGGCCGA GGTCGTGATT
CCTAACGCTA AACAAAGCTT ACCCGCCGGG CTGTATAGCC TGGTAAAGTT TGATATGATT
GCCGCCCAGG CTCCCGTACT GATTCCGGCC AATGCATTGC AGATAACACC CGATGGACCG
CGGGTGGTCG TTGTCGATGA TGGTCAGCGT GTTCATTTTG TGCCCATTAA ACTAGGGCGC
GATTATGGCA CAACGCTCGA AGCCGTAAGT GGTCTGACCG GGCAGGAGTT AGTTGTAACC
AATCCAAACG ACCGTCTGCG CGATGGTCAA AAAGTAAGAT TTCGGAAGAC CCCAGCCGAA
AAAACCATAG TCCAACGATG A
|
|---|
| Protein sequence | MKALRILIPL LLLVAVFVFF GVLPRMRNTQ ELKAAVSEEK SRDPIVNAVS LKHSSDTTGL
TLPGQIQPFR QTPLYARTQG FLRRWYVDIG GQVKQGQLLA TIDVPELDQD IARAKADLQL
AKINLERLQS VELPGAIARQ DVDTRRSAVT VAEANVGRLQ ALKNLQQIRA PFSGIITSRT
AENGTLVSPG TGQPLFTLSE VGSLRVFVDV PQTYYQYMKI GMPATVTIPE LKNQTFQGKV
MHTSGALRSD SRTLLAEVVI PNAKQSLPAG LYSLVKFDMI AAQAPVLIPA NALQITPDGP
RVVVVDDGQR VHFVPIKLGR DYGTTLEAVS GLTGQELVVT NPNDRLRDGQ KVRFRKTPAE
KTIVQR
|
|---|
| |