Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_5169 |
Symbol | |
ID | 8728935 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | + |
Start bp | 6311440 |
End bp | 6314529 |
Gene Length | 3090 bp |
Protein Length | 1029 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | |
Product | protein-export membrane protein SecD |
Protein accession | YP_003389940 |
Protein GI | 284040010 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.325981 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAAACA GAACCGGAAT TATCATTCTG ACAGGCGTTA TTGCAGCCAT CTGCATTTAC TTCCTGTCGT TCACGTTTGT CTCGCGGGGC GTTAAAGCCG ATGCCGAGGC CTATGCCACC AACAAACAGG GTGTTGTTGA CCGCGAAAAG AAACAACACT ATCTCGATTC ACTTTGGAAG GAGCCTATTT ATCTGGGCAG CACGCTTCAG GAAGTTACCG AGCGTGAACT GGGCCTTGGC CTCGACCTGC AAGGTGGTAT GCACGTTGTA CTGGAAGTAT CGCCTGCCGA TATTCTTCGC AGCCTGTCGG GCAACAACCG CGACCCCAAA TTCAACGAAG CCCTGAAACT GGCCGTTGAA GATCAGAAAA CAAGCAACAC CAGCTTTGTT GATCTCTTTG CCAGTGAGTT CAAGAAACTG GCTCCCGACA CCAAACTTGC TTCTGTGTTT GCTACCAGCG CCAACCGCAG CAAGATCAAC TTCCAATCGT CGGATACCGA AGTACGGAAG TTGCTGAACG ATGAAGTAAA CGGCGCTACG ACGCGGGCCT TCCAAATCAT CCAGGCGCGG GTCGACAAAT TCGGAGTAGC CAACCCAAAC ATCCAGCGGT TGCCGGGTTC GGGTCGTATC CAGATCGAAT TGCCGGGCGT TGATAACCCC GAGCGTATTC GTCGTCTGTT GACCGGTGCT GCCAAACTTG AATTTACCGA AGTATACCGC CTGAACGAAC TGGCTCCGGC AATTGAAGGC ATGGGTGCGT ATCTGCTCAG CCAGGAAGCC GCCCGCAAGG CCGCTCTGAA AACAACCGCC ACGACACCAG CAACGGGTTC GGCAGCACAG GGTGCATCGA GCCTTGAGTC GCAGCTGGCG CAGGGAAGCA AGAAAGATTC GACAGCAAAG AACGATACCG CAGCGGCTTC TGCTCAGGGC ACCGCGCTGA CACAGTTATT TTTGCCCGTT GGCCAGGACC AACTGGGTGT TTACCTGAAA GATACCGCCC GGGCCAACGA CGTGCTGAAC GCACCTGAAG TAAAAGGTCT TTTCCCTGCC GATGCTTTTT TTGCCTGGGA TCGTAAAACA TTCAAAGCCA CGGATGGCAA AGAAATTCTG CCCCTTTATT TCCTGAAAAA AGCCGGTGGA CGTGCGCCCC TCGAAGGTGA TGTAATTACG GAAGCGTCGA ATGATTACGA CGACCGTGGC CGTCCGGAGG TGACCATGAA CATGAACCCC GAAGGTGCCC GTAAATGGAA AAACCTGACA GCCGCCAACG TAGGTCGGCC AGTAGCTATT CTGCTGGACA ATCTGGTATA CACAGCGCCA AACGTACAGA ATGAAATTCC AAACGGTCGT TCGAGCATCT CGGGTAACTT CACCGTCGAA GAAACCAAAG ACATGGCCAA CGTACTGAAA GCCGGTAAGC TCCCTGCGCC AACTAACATT GTTGAAGAGA GCGTTGTAGG GGCTACCCTG GGTTCGGAAG CCGTAAGTGC CGGTGTTCTT TCGTCGATCA TTGGTATTCT GCTGGTACTG GCCTTTGTGG TATTCTATTA CAACCGTGCC GGTTTCATCG CCGACATCGC TCTGATCGTT AACCTATTCT TCCTGATGGG TGTAATGGCC TCGCTGGGAG CCGTCCTGAC CATGCCGGGT ATTGCCGGTA TCGTACTGTC GATCGGTATG GCCGTTGATG CGAACGTACT GATTTTCGAA CGGATTAAAG AAGAGATGGC GCTGGGTAAG ACGTTCAAGC AGTCGGTTAC CGATGGTTTC CAGAACGCGC TTTCGTCGAT TATCGACTCT AACGTAACGA CCTTCCTGAC GGGTATCGTT CTGTTCATCT TCGGAACGGG TCTGATTCTG GGCTTTGCTA CCACACTGAT CATTGGTATT CTAACGTCTT TGTTCGCGGC TATTTTCATC ACCCGCCTGT TGCTGGAATA CTATATCCGT AATGGCAAAA CGCTGTCATT TAGCTCAACC TGGGCGAAGA ATCTGTTTGC CGATTCCAAC TTCGATTTCG TATCACGCCG GAAACTGTAT TACACCGTCT CTTCGATCAT TATCGCAGCG GGTATTATCT CCGCCGTTTT CAAAGGATTC GGTCTTGGTG TTGACTTCAA AGGTGGCCGG TCGTATGTGA TTCGTTTCGA GAAGGCTGTT AGTACAGAAG ATGTGCGTAA CTCGCTGGAA ACTGTTCTAG GTGGCTCGCC TGAGGTGAAA ACTTACGGTG GTACGGGTAT CGGTGCCAAT CAGGTGAAAG TAACGACGCC TTATCTGGTA GATGATAACT CGCAGGGTGC CGATAAGAAA GCTGAAGCGA CCATTTACCA AGGGCTCAGC GCTATTAAAG GCAATCCGGC CAAGATTGAA AGTTCGCAGA AAGTTGGTCC GACCATCGCG TACGACTTGC TAACATCGGC CCTTTGGTCG ATCCTGCTGG CCGTAGCGGT AGTATTCGTG TACATTCTGA TCCGCTTCAA GAAGCTGGCT TTTGGTTATG GAGCCGTTGT GGCCATGTTC CACGACGTGC TGATCATTCT GGCTATCTTC TCCATCTTCA ATGGCCTACT GCCTTTCTCG CTGGACGTTG ACCAGGCGTT TGTGGGTGCC TTGCTCACCA TTATGGGTTA CTCCATGAAC GATACCGTTG TGGTTTTTGA CCGGGTACGG GAGTATCTGG CCGAAAACAA AGGCAAGAAA GAGTCTATTG CTACCATTAT TAACAATGCC CTCAATAGCA CCCTGAGCCG CACGGCGGTA ACCGGTTTCT CAACCATTCT GGTACTGCTG GTACTGTTCA TCTTCGGTGG TGAAACCATC CGTGGTTTCT CGTTTGCCAT GCTCATCGGG GTTGTGGTAG GTACGTATTC GTCCTTGTTC GTAGCTACCC CGATTGTAGT TGACTCGCTG ACCACGGCTC AGGAGAAAGA AGCGCTCACG CCCACTATAG CCGCTGCCGC TGAAAAGAAA ACCGGCTTCG ATGCCATTCC GGCTGATTTC ACGAGTGCTG CTCCGGCAAC ACCCGAAGAG TTCACGGCGA AAAAGGAGAA GAAGGATAAA AAACCGTTGA TCCGCCCTTC GCAATCGTAA
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Protein sequence | MQNRTGIIIL TGVIAAICIY FLSFTFVSRG VKADAEAYAT NKQGVVDREK KQHYLDSLWK EPIYLGSTLQ EVTERELGLG LDLQGGMHVV LEVSPADILR SLSGNNRDPK FNEALKLAVE DQKTSNTSFV DLFASEFKKL APDTKLASVF ATSANRSKIN FQSSDTEVRK LLNDEVNGAT TRAFQIIQAR VDKFGVANPN IQRLPGSGRI QIELPGVDNP ERIRRLLTGA AKLEFTEVYR LNELAPAIEG MGAYLLSQEA ARKAALKTTA TTPATGSAAQ GASSLESQLA QGSKKDSTAK NDTAAASAQG TALTQLFLPV GQDQLGVYLK DTARANDVLN APEVKGLFPA DAFFAWDRKT FKATDGKEIL PLYFLKKAGG RAPLEGDVIT EASNDYDDRG RPEVTMNMNP EGARKWKNLT AANVGRPVAI LLDNLVYTAP NVQNEIPNGR SSISGNFTVE ETKDMANVLK AGKLPAPTNI VEESVVGATL GSEAVSAGVL SSIIGILLVL AFVVFYYNRA GFIADIALIV NLFFLMGVMA SLGAVLTMPG IAGIVLSIGM AVDANVLIFE RIKEEMALGK TFKQSVTDGF QNALSSIIDS NVTTFLTGIV LFIFGTGLIL GFATTLIIGI LTSLFAAIFI TRLLLEYYIR NGKTLSFSST WAKNLFADSN FDFVSRRKLY YTVSSIIIAA GIISAVFKGF GLGVDFKGGR SYVIRFEKAV STEDVRNSLE TVLGGSPEVK TYGGTGIGAN QVKVTTPYLV DDNSQGADKK AEATIYQGLS AIKGNPAKIE SSQKVGPTIA YDLLTSALWS ILLAVAVVFV YILIRFKKLA FGYGAVVAMF HDVLIILAIF SIFNGLLPFS LDVDQAFVGA LLTIMGYSMN DTVVVFDRVR EYLAENKGKK ESIATIINNA LNSTLSRTAV TGFSTILVLL VLFIFGGETI RGFSFAMLIG VVVGTYSSLF VATPIVVDSL TTAQEKEALT PTIAAAAEKK TGFDAIPADF TSAAPATPEE FTAKKEKKDK KPLIRPSQS
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