| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_5063 |
|---|
| Symbol | |
|---|
| ID | 8728828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 6182488 |
|---|
| End bp | 6185517 |
|---|
| Gene Length | 3030 bp |
|---|
| Protein Length | 1009 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | D-lactate dehydrogenase (cytochrome) |
|---|
| Protein accession | YP_003389837 |
|---|
| Protein GI | 284039907 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.424632 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTATAC GAGTTTCTCC TCCCTTTACT GACTTGAAAG TTCGCCTGGA AGGTGACCTT
TTTACCGATA CAACCTACCG AACGCTGTAC GCAACAGACG CTTCGGCGTA CCGGGAAATG
CCAATGGCTG TGGCCGTTCC CAAAACAATC GAGGATCTAA AGACCCTGAT TGCCTTTGCC
AGGGAGCATA AAACATCCCT TATTCCCCGC ACGGGCGGAA CATCCCTGGC AGGCCAGGTG
GTGGGCAGCG GCATTGTTGT CGATGTATCG AAGCATTTCA CCAAAATTCT GGAGATCAAC
CCCGAAGAAC GGTGGGTACG CGTTCAGCCG GGCGTTATTC GGGATGAGTT GAACCAATTT
CTGAAACCAT ACGGACTTTA TTTTGGCCCC GAAACCTCCA CCGCCAACCG GGCTATGATT
GGCGGCATGG TGGGCAACAA CTCCTGTGGT TCAAATTCGG TGGTATACCG GGCCACCCGC
GAACATACAA TTTCAGTAAA AGCACTGCTG GCCGATGGCT CGGAAGCAGA GTTTGGTCCG
GTAAACGGTT GGGATTTTAC TAAACAAGTG GGCGAAGCAA GTCGAAAAAA TGGCTCAGCT
ACCCTGGCCG ATACCATTCT GCTGAAAACA AACGCCATTC TGTCGGACCC GGCCAACCAG
GAAGAAATCC GGCGAAATTT TCCGAAGAAA ACCATCGAAC GACGCAACAC AGGCTATGCG
CTGGACGCCC TGCTCGACAT GCAGCCGTTT GAACCGGAAG GTGAGCCGTT TAACATGGCC
AAGTTCATTG CCGGTTCGGA AGGTACACTT TGCTTCCTGA CCGAGATCAA GCTGAATATT
GTACCCTTAC CACCCAAAGA AAATGGGCTG GTGTGTGTGC ATTGCCATTC CATTGACGAG
TCGCTGCGCG CTACGCTGGT TGCCCTCAAA TACAAACCCT ATGCCGTTGA ACTGATCGAC
GATATTATTC TGGAACGGGC CGACACCAAC CCGGAACAGC GCAAAAACAG CTTCTTCGTT
CAAAAAACAC CAGACGACCG TTTCCCCATT ATTCTCGTCG TCGACCTGTC GCGCGATACC
CGCGCTGAAA TCGAGCAACT CGCTGCCGAG ATGATCGCCG AAATGCAGGC CGCTGGGATG
GGATACCATT ATCCGCTGCT GTTCGGCGAC GATTCCAAAA AAATCTGGAC GCTCCGCAAG
GCTGGGCTAG GCCTATTAGG CAACCTCCCC GGCGACGAAA AAGCGGTAGC GGTCATTGAA
GATACCGCCG TAGACGTACA CGACCTGCCC GACTATATTC GCGATTTCAA CGAAATTCTG
GCCAAGCACC ACATGCACTC CGTCCATTAC GCCCACGCGG GGTCGGGGGA ACTGCACCTG
CGGCCAATCA TCAACCTTAA AACAGAAGAA GGTCACCGGC AGTACCGGAT GATTGCCGAA
GAAATTGCCA CACTCGTTAA AAAATACGAC GGCTCGCTCT CGGGCGAACA TGGCGATGGA
CGATTACGGG GCGAGTTTAT TCCGCAGATG GTAGGTCCGC ACAACTATGA ACTGATGCGG
CAAATCAAGC ATACATGGGA CCCCGACGGC ATTTTCAACC CCGGCAAAAT TGTAGAAACG
CCCCCTATGG ATACGTTTCT GCGTTACGAA GCCGGGCAGC AGACCCCAGA TTTCAAGACC
TACTTCCGTT ACAAGGACCA GAATGTTTTA CAACATGCCG AGCAATGCAA CGGCTCGGGC
GATTGTCGTA AAACAGAAGC GTCGGGCGGG ACCATGTGCC CAAGCTACAT GGCCACCCGC
GACGAAAAAG ATACAACCCG CGCGCGGGCC AATATTCTAC GCGAGATGCT GACGCGTTCG
ACCAAAGAGA ACCGGTTCGA TCACGAAGAG ATCAAGGCGA CCTACGACCT CTGCCTGTCG
TGCAAAGGGT GTAAAAATGA ATGTCCTTCC AACGTCGATG TAGCGAAGTT AAAAGCTGAG
TTTCTACAGC ACTATTACGA CTCGCACGGT ATTCCTGTAC GTTCCAGATT GATTGCCAAC
TTCGCCCGGC TTTCCACTCT GGCATCCCTG GTTCCCTGGG CCTGGAATGG CGTTTTGGGC
ACTCCATCGC TCCGGCGTAT TGCCAACCGA CTCGTTGGCT TCCACCCGGA GCGCACCATG
CCAAAAATGG GGAAGACGAC GTTACGGAAG TGGTTTAGTA ATAGGAGCGA GGAGCGAGGA
GCGAGGAGTG AGGAGTTGCT GACCGCACCG GCGGACCGGC GTGTTGTGCC ACCGGATGGC
TCCTCGCTCC TCGCTGCTCA CTCCCAACTC CTCCTCTTCT GCGATGAATT TACCAATTTC
AACGATGTGG AGGTTGGGCA GAAGGCGGTT CAGTTATTTG AGCAGCTTGG CTATAAAGTA
GTTATTCCGG AGCATGGCGA AAGTGGCCGG GCTGCCTTGT CGAAGGGAAT GCTGAACTAC
GCAAAGACGC TGGCCGAGAA GAACATAAGG CTATTGAAAG ATAAGGTGTC GGCCGAAACA
CCACTAGTTG GGTTGGAGCC TTCGGCCATT CTGACTTTCC GCGATGAATA TCCTGATCTG
GTCGACGAGT CGCTGGTTGC CGATGCGAAG CGAATTGCGG AAAATGCGCT GACCTTTGAA
GAATTTATTG CGCGCGAAAT GGAAGCAGGC CGCATCAAAC CCGAGCAATT CACGACCGAA
ACAAGGCTCA TCAAACTACA CGGCCATTGT CAGCAAAAGG CAGTATCGTC GCTGGTGCCG
GGCAAAAAAG CGTTGTCGTT GCCCAAGAAC TATACGGTTC AATTGATTCC GTCGGGTTGT
TGCGGCATGG CCGGTTCATT TGGGTACGAA GCCGAACATT ATGAGGTGTC GATGAAAGTT
GGCGAACTCG TTCTTTTCCC CACGGTTCGC CAGCAGCCCG ATGGCGTGAT TATTGCGGCC
CCCGGCACAT CCTGCCGCCA TCAGATTAAG GATGGTACGA GTCGTACAGC TCAGCATCCC
GCCGAAATAT TATTCGATGC GCTCGTATAA
|
|---|
| Protein sequence | MSIRVSPPFT DLKVRLEGDL FTDTTYRTLY ATDASAYREM PMAVAVPKTI EDLKTLIAFA
REHKTSLIPR TGGTSLAGQV VGSGIVVDVS KHFTKILEIN PEERWVRVQP GVIRDELNQF
LKPYGLYFGP ETSTANRAMI GGMVGNNSCG SNSVVYRATR EHTISVKALL ADGSEAEFGP
VNGWDFTKQV GEASRKNGSA TLADTILLKT NAILSDPANQ EEIRRNFPKK TIERRNTGYA
LDALLDMQPF EPEGEPFNMA KFIAGSEGTL CFLTEIKLNI VPLPPKENGL VCVHCHSIDE
SLRATLVALK YKPYAVELID DIILERADTN PEQRKNSFFV QKTPDDRFPI ILVVDLSRDT
RAEIEQLAAE MIAEMQAAGM GYHYPLLFGD DSKKIWTLRK AGLGLLGNLP GDEKAVAVIE
DTAVDVHDLP DYIRDFNEIL AKHHMHSVHY AHAGSGELHL RPIINLKTEE GHRQYRMIAE
EIATLVKKYD GSLSGEHGDG RLRGEFIPQM VGPHNYELMR QIKHTWDPDG IFNPGKIVET
PPMDTFLRYE AGQQTPDFKT YFRYKDQNVL QHAEQCNGSG DCRKTEASGG TMCPSYMATR
DEKDTTRARA NILREMLTRS TKENRFDHEE IKATYDLCLS CKGCKNECPS NVDVAKLKAE
FLQHYYDSHG IPVRSRLIAN FARLSTLASL VPWAWNGVLG TPSLRRIANR LVGFHPERTM
PKMGKTTLRK WFSNRSEERG ARSEELLTAP ADRRVVPPDG SSLLAAHSQL LLFCDEFTNF
NDVEVGQKAV QLFEQLGYKV VIPEHGESGR AALSKGMLNY AKTLAEKNIR LLKDKVSAET
PLVGLEPSAI LTFRDEYPDL VDESLVADAK RIAENALTFE EFIAREMEAG RIKPEQFTTE
TRLIKLHGHC QQKAVSSLVP GKKALSLPKN YTVQLIPSGC CGMAGSFGYE AEHYEVSMKV
GELVLFPTVR QQPDGVIIAA PGTSCRHQIK DGTSRTAQHP AEILFDALV
|
|---|
| |