Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_5027 |
Symbol | |
ID | 8728792 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | + |
Start bp | 6128304 |
End bp | 6131102 |
Gene Length | 2799 bp |
Protein Length | 932 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | |
Product | 2-oxoglutarate dehydrogenase, E1 subunit |
Protein accession | YP_003389803 |
Protein GI | 284039873 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.139273 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCAGT ACTCATATAT AGCCAACTCC GACGCGGCTT ACGTAGATCA ACTTTATCAG TCTTATAAAC AAGACCCACA GACAGTTGAC GAAAGCTGGC AGCAATTTTT TAAAGGGTTC GAGTTTTCAC TCACCTACGG TGAAAAAGCC AATGGAAACG GTGCCGGCAC TCAGGCCGAG CCAGGCAAAA GCAATGGTAC AGCCCTAAAC GGCTCATCCG GCAACGGACA GGCCACGGCC AAACCAGTGG ATGCCACCCA CGCCGAAAAG GAAGTCTCGG TTGCCAGTTT GATCAAGGCA TACCGGTCTC GTGGTCACTT GCTGGCGAAA ACCAATCCAC TCCGCGAACG CAAAGACCGG CAACCCCGCG TCGATTTGCC CGATTACGCC CTTTCCGAAG CCGATCTGGA TACGGTATTC GAGTCAGGTA AACTGCTCGG AATCGGACCG GCTACGCTGC GCGTTATTAT GGATTCGCTG CGGAAAATCT ACGCTGGTGA AATTGGATTT GAGTACATGT ACATCCGCGA GCTGGATGTA AAAAACTGGT TGCGCAATAA GATTGAGAAA GAAGCGCTCG TTTTCATGCC TACCCTCGAT GAGAAAAAGC GTATTCTCGA AAAACTGAAC GAAGCTACCG TTTTCGAAAA CTTCCTCGCC ACAAAATACC TCGGTCAGAA GCGTTTTTCG CTGGAAGGTG GTGAAGTGAC CATTCCGGCC CTCGACACCA TCATCAGCCA GGCGGCCGAC ATGGGCGTTG AAGAGGTAAT GATCGGTATG GCACACCGCG GACGGCTTAA CGTACTGGCC AATATTCTGG GCAAGTCGTA CGAGTCGATC TTCGATGGCT TCGAAGGCAA CGTACCCGAT CAGGTACACG GCGATGGTGA CGTAAAATAC CACCTCGGCT ATTCGAGTCT AACCGAAACC AAATCGGGCA AGCAGATCAG CGTGAAGCTG GCCCCTAACC CATCGCACCT GGAAGCGGTT AACCCCGTTG TTGAAGGCTT TGTGCGGGCG CAGGCCGACG AAGAATACCA GGGCGATTTC ACCAAGATCA TGCCTATCCT GATCCACGGC GATGCAGCCG TTGCCGGTCA GGGTATTGTA TATGAGGTAA CCCAAATGGC GAAACTGGCG GGCTATACGA CCGGCGGTAC AGTCCACTTT GTTATCAACA ACCAGATTGG CTTCACCACC GATTTCGAAG ATGCCCGTTC ATCTATTTAT TGCTCAGACA TCGCCAAAAT CATCGACGCA CCTATTTTCC ACGTCAACGG CGATGACCCT GAAGCGGTTA TTTTCTGCGC TAAACTAGCG GTAGAGTTCC GGGAGAAGTT CAACCGGGAC GTGTTTATCG ACATGGTTTG CTATCGTCGC TACGGCCACA ACGAAGCCGA CGAGCCGAAG TTCACGCAGC CGACGATGTA CAACATCATC GACAAGCATC AGAATCCGCG TGAAATCTAC AAAGACCTGC TCATCAAGCG GGGCGATGTC GATGCGGAAC TGGCGCAACG CATGGATACG GAATTCAAGA AGCAGTTGCA GGACCGGCTC GACCGCGTCA AGCAAAAAGC CGAAATTCCA TACAAACCAC TGCGACTCGA CCGTGACTGG TCGGAACTTC GTTTCAGCGA ACCCTCCGAC TTCGACAACT CGCCCGAAAC GGGAGTACCG GCCGAAACAC TGCAAACTAT TGGCAACGCG CTGGTGAAAT TACCGGAAGG GTTCAAGCCG CTGAAGCAGA TCGACAAGCT TCTGAAAGAC CGGCAAACGA TGCTCAACGA CACCAAAATG GTGAACTGGG GTACGGCCGA ACTGCTGGCC TACGGCTCGC TGCTACTCGA AGGCAGAGCT GTTCGGCTGA GCGGCCAGGA TGTGCAGCGG GGTACGTTCT CGCACCGCCA TGCCGTTCTG CATGATTCCG AGACGAATGC CTCGTACTCG TCACTGGATT ACATTCAGGA TGGTCAGCAG AAATTCCAGA TATACAACTC CTTGCTGTCG GAATACGGCG TCCTTGGCTT CGAATATGGT TATGCCATGG CAAACCCGCA GGCGCTGGTG ATCTGGGAAG CACAGTTCGG CGATTTCTCG AATGGTGCTC AGCTCATCAT CGACCAGTTT ATTGCCGCTG CCGAGTCGAA ATGGGGTATC CAGAATGGTG TAACGATGTT GCTTCCCCAC GGCTACGAAG GCCAGGGGCC GGAGCACTCC AACGCCCGCC CGGAACGGTA TCTGCAACTT TACGCAGAAT ACAACATGGT GGTGGCTAAT ATTACTACTC CGGCAAACCT GTTCCACGTT ATGCGTCGGC AATTGGCCTG GGCATTCCGG AAGCCGCTGG TTATCATGTC TCCCAAATCG TTGCTTCGCC ATCCGAAATG TATTTCCCCG CTGGAGGACC TTACTAAAGG ATCGTTCCAG GAAATTATCG ATGATAGCTA CGCACAGGCG AAAAAGGTGA CGCGCGTGCT GCTTTGCACA GGTAAAGTCT ATTACGACTT ACTCGACAAG CAACAGGCCG ATCAGCGCGA CGACGTGGCC ATTGTACGCA TTGAACAGTT GGCTCCACTT TCCAAAACGC AACTGAACGC CGTGTTGGAG AAGTACAAAA AAGCCGAAAT CTTCTGGGTA CAGGAAGAGC CGGAAAACAT GGGCTACTGG ACGTACCTGC TACGGATTGG GTTGAACTAT CCGATCATTT CGCGGAAAGC TTCGGCTTCA CCCGCTACCG GTTACCCAAA AATACATTCT CAGGAACAAG CCGATATCGT TCGAAGAGCG TTTGAATAA
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Protein sequence | MDQYSYIANS DAAYVDQLYQ SYKQDPQTVD ESWQQFFKGF EFSLTYGEKA NGNGAGTQAE PGKSNGTALN GSSGNGQATA KPVDATHAEK EVSVASLIKA YRSRGHLLAK TNPLRERKDR QPRVDLPDYA LSEADLDTVF ESGKLLGIGP ATLRVIMDSL RKIYAGEIGF EYMYIRELDV KNWLRNKIEK EALVFMPTLD EKKRILEKLN EATVFENFLA TKYLGQKRFS LEGGEVTIPA LDTIISQAAD MGVEEVMIGM AHRGRLNVLA NILGKSYESI FDGFEGNVPD QVHGDGDVKY HLGYSSLTET KSGKQISVKL APNPSHLEAV NPVVEGFVRA QADEEYQGDF TKIMPILIHG DAAVAGQGIV YEVTQMAKLA GYTTGGTVHF VINNQIGFTT DFEDARSSIY CSDIAKIIDA PIFHVNGDDP EAVIFCAKLA VEFREKFNRD VFIDMVCYRR YGHNEADEPK FTQPTMYNII DKHQNPREIY KDLLIKRGDV DAELAQRMDT EFKKQLQDRL DRVKQKAEIP YKPLRLDRDW SELRFSEPSD FDNSPETGVP AETLQTIGNA LVKLPEGFKP LKQIDKLLKD RQTMLNDTKM VNWGTAELLA YGSLLLEGRA VRLSGQDVQR GTFSHRHAVL HDSETNASYS SLDYIQDGQQ KFQIYNSLLS EYGVLGFEYG YAMANPQALV IWEAQFGDFS NGAQLIIDQF IAAAESKWGI QNGVTMLLPH GYEGQGPEHS NARPERYLQL YAEYNMVVAN ITTPANLFHV MRRQLAWAFR KPLVIMSPKS LLRHPKCISP LEDLTKGSFQ EIIDDSYAQA KKVTRVLLCT GKVYYDLLDK QQADQRDDVA IVRIEQLAPL SKTQLNAVLE KYKKAEIFWV QEEPENMGYW TYLLRIGLNY PIISRKASAS PATGYPKIHS QEQADIVRRA FE
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