Gene Slin_4954 details

Gene Information

• Locus tag: Slin_4954
• ID: 8728718
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: +
• Start bp: 6038101
• End bp: 6041649
• Gene Length: 3549 bp
• Protein Length: 1182 aa
• Translation table: 11
• GC content: 55%
• Product: TonB-dependent receptor plug
• Protein accession: YP_003389731
• Protein GI: 284039801

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 21
• Fosmid unclonability p-value: 0.0461208
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGCTGTT CGTTCTTTCT CGGCTGGATA ACGGCCCTTC TGCTTCTGGG ATCGACCCGG 
ATGGCTCATG GACAAACGGC CGCCGTACTG ACCGGCTCCG TAACGGATGC CACGACGGGA 
AAACCCATGC CGTTTGCCAA CGTCTACGTA AATGGATCGA CGCGCGGGAC AATCACCGAC 
GAAAAGGGGG TTTATACGTT GACGGGCGTG CCACTGGGTA CGGTCGAAAT AGCCGCTTCC 
TTTGTTGGCT ATCAACCCGC CAGGCAAACA ATCCGATTCG ATAATACAAC ACCGCAGAGA 
GCAAATTTCC AGCTGAAACC GAGTGAACAA ACGCTGGAAG CTGTAACCGT ACGGGGCAAT 
CCGAAGCAAT GGGAACGACA GTTGCGGCAG TTTAAAAAGC AACTCTTCGG CGAGCCGTTT 
GGCGGCCAGT GTCTGCTGGT CAACAGCGAA GTGATTAGTT TTAACGAAGC CAAAGATCAT 
CTGTATGCAA CGGCTAACGA GCCGTTGATT ATTGAGAATC AGGCGCTGGG CTATCGGTTG 
ATTTACGCGT TGCAGCATTT CGATGCGACT TCATCCGGAA ATGTTTATTC GGCGGGTACG 
GCCCGTTTCG AAGAACTAAA ACCCCAGAAC GAGCGGCAAG CCAACCAGTT TCGGCGTAAC 
CGGTTGACCG CCTACAAAGG CTCAATCCGG CACCTGATGG CCAGCCTGGC GGATAATACG 
TTCAAAGAGG CAGGTTTTCT GGTCTACCAG GAAGATGTTA CGAAGCCGAT TTTCCTCGAA 
AGTCGGTCCA TTACGCTGGC CGCTGCGGTT AGTGACTACA AGCGTCTGAT TCCAGTTAAG 
GTGTCTACGC TGATTCAACC CGGTCGATTA GCGACGGAAC GACGGCTGGT TTCGCCCATG 
AAACTGATTG TGTTCTATAC GAATGCGGTC TCGGGTTTCT CGCCCTATCC CGATGCCCGT 
TATGCCTACA CGGAAATGAC CTTGCCCCGC AGTCAGCTGC AACTGACCGT CGATGGGATT 
ATTACGATGC CGGAAGGGAT GGAAGCGAAA GGCTCGATGG GGAACGACCG GCTATCGACC 
ATGCTGCCCG CCGACTGGAA ACCCGATGGA ACTCAGAAGC AGACGCTTAC GAACGACCCG 
CTGGCTACCC AGGGCAAACT TACCCTACCC GACGCCCGCC TGGAACGAAT AACGACGGCC 
TTCAACGAAC GATTCAAATT ACTGGCTCCC AACGTGTTTG TACACATCGA CAAACCGGTT 
TACGCCACCG GCGATCGGCT CTGGATGAGT ACGTACTTCC TCGACGCAGC CAATCACCAG 
CGAGCCAGTG GCGAAACGGC CCTGCATGTC GACCTGCTTT CGTCAACCGG CAAGCTTGTG 
CAGCACCAAT GGGTACGCAT CGTTGACGGA CGGGGCGAGG GTAACTTCCG CCTGTCGGAT 
ACCCTCCTGA CGGGAACGTA CCGCCTGCGC GCCTATACCG ACGAAGATGA TGCCCAGCGA 
CGCCCGGCTT TCGAGCGGTC GGTGGCAATC TATAATCTGT TTCGGAACGA GGTATCCATA 
CGGAGTGATT CGGTTTCTCA GCCAGTAGAT GTACAGATTT TGCCGGAAGG TGGTCGCTGG 
ATTACGGGAC TACCCACCCG TCTGGGCGTA AAAATCATAC AGCCCAACGG GCATGGCTTG 
CTCATCGCGG GGCGTATTGT CGACGACCAG GGCGCTGAAG TTGCTCGTTT CAGGACCAAT 
CCGCAGGGAA TGACCAGCGT ATCGATGGAG CCTAAGCCGC AGCGGACCTA TTACGCCGAC 
ATTGTGTATA ACAACCAGCC GCAGCGTGTT CCGTTGCCCA AACCCGAAAC GGAAGGGCTG 
TTGCTTTCGG CCGATGCAAT CAGCGATACA ACCCGTCTGG CGTTGACCAT ACTAAGCACT 
AACCGGGCGG TTATCGACTC AGTGTATATC CTGATTCAAC AACACGGCCG GGTGGTCGAT 
CAGCGAAAAC TTCTCCTGCA AAACGGGGTG GCGAAGTTAA GCCTGCCCAT GATGAGCTGG 
TTACCGGGTC TTACGCAAGT CACCCTGTAC GACGCCACCG CTAAGCCGCA AGCCGAACGC 
CTGGTTTTCG TGCCCGAATT CGTGGCACCG GTCCGTGTGT TGATGGGCAT AAACAAAACC 
CGATATCAGC CCCGCGAGCA AGTTAGCCTG AGCGTCAATC TGACCGATAA CGGATTACCG 
GCACTGGCCG CTTTATCAGC GTCAATTACC GATGCTGACC AGGTGCCGGA TGATACCGCC 
GAGGCTACGT TACCCGCACA CCTTCTGCTG ACGGGAGAGC TTCGGGGACG TATCGAAAAC 
CCCAACCAAT ACGTTGCGAA TCACTCGGCA GAAACCCGTC GAGCGCTGGA CGACCTGCTA 
CTGACGCAGG GCTGGCGACG CGTAACAGGC ACGCCCGAAA CGGAACGACT CGGTGGTGTA 
TCACTCAGGG GACGTATTGT AAATGCGAAA AATCAACCCA TTTCCGGCGC ACAGCTCATG 
GTAGCACCAA CGGCCGGACA ATCGTCCATA AAATCGGCTG GGGTTGATGA ACAGGGGCGC 
TTCCGGCTGG CGGGGCTGGC CATTGCCGAT ACGGTACGGT TACTGACGCA AATCACGGAT 
CGTCAGTTTA AAAATATCCC AACCAAAGAC GCCATTCTAG TTCTGGAAGG GCCGGGTAAA 
TTGTGGGAAT ACGCTAAGCT ACCGGTTGCG CCAAACGGGC CGACGTTGCG GTCCCAGTTG 
GAAGCGGCCC GCATTCGACA GGAAGCAAAC GCCGGTTTTT ACCGTGACAA AACAGCAAAA 
GTGCTAAAGG AGGTGACCGT TCGAGCACAG AAATTCGATA AAAGACCCGA GGATATTCAA 
CAGCGTAGTT TACACAATGA GGCTGATGCG GTTCTAGTGG TCGACGAGAA ATCGCCCGCT 
TACCAGAATC TATACGAAAT GATTCAGGGA CGATTGGCAG GCGTGACAGT TACCCGAGAA 
GGGGCCGCTG TTGCGCGTAG CTACAAGGTG TTTATACGGG GCGTGAACAG TTTCAAAAGT 
GGTATACAAC CCTTGTATCT GATGGATGGT ATACCCATAG AGGACCCCGA TGGAACCGCT 
TTGCTATTTT TCAGTACAAG TGATATTGAA CGGATTGAAT TGCTCAAAAG TGCGATTACA 
ACGGGTACCT ACGGAGCTCG GGGCGGAAAC GGGGTGATAG CTTTTTACAC CAAAAGCTAT 
CGATCCATGC AGGGAAGTGA GAAGCTTAAG GAGGGAATGA CGCCGATTCA ATTTATTGGC 
TACCCGTCGG TGCAGCGCGA GTTCTACGTA CCGCACTACG ATGCGGAGGC AACCACCAGC 
CCGATTTCCG GCCCCGTCGA TAACCGGGAT GTATTGTATT GGAAACCAAT GATGCAAACC 
GACAGTCAGG GACGCAGCCA GCTACGTTTT CCGCTGTCGG ACGTCGTTCG GACGGTACGC 
GTGGTGATAC AGGGTGTTAC GGCCGATGGT CGTCCGGTGC TGGGCGTTCA GCTAATCCGG 
GTTCAATAA 

 

Protein sequence

MRCSFFLGWI TALLLLGSTR MAHGQTAAVL TGSVTDATTG KPMPFANVYV NGSTRGTITD 
EKGVYTLTGV PLGTVEIAAS FVGYQPARQT IRFDNTTPQR ANFQLKPSEQ TLEAVTVRGN 
PKQWERQLRQ FKKQLFGEPF GGQCLLVNSE VISFNEAKDH LYATANEPLI IENQALGYRL 
IYALQHFDAT SSGNVYSAGT ARFEELKPQN ERQANQFRRN RLTAYKGSIR HLMASLADNT 
FKEAGFLVYQ EDVTKPIFLE SRSITLAAAV SDYKRLIPVK VSTLIQPGRL ATERRLVSPM 
KLIVFYTNAV SGFSPYPDAR YAYTEMTLPR SQLQLTVDGI ITMPEGMEAK GSMGNDRLST 
MLPADWKPDG TQKQTLTNDP LATQGKLTLP DARLERITTA FNERFKLLAP NVFVHIDKPV 
YATGDRLWMS TYFLDAANHQ RASGETALHV DLLSSTGKLV QHQWVRIVDG RGEGNFRLSD 
TLLTGTYRLR AYTDEDDAQR RPAFERSVAI YNLFRNEVSI RSDSVSQPVD VQILPEGGRW 
ITGLPTRLGV KIIQPNGHGL LIAGRIVDDQ GAEVARFRTN PQGMTSVSME PKPQRTYYAD 
IVYNNQPQRV PLPKPETEGL LLSADAISDT TRLALTILST NRAVIDSVYI LIQQHGRVVD 
QRKLLLQNGV AKLSLPMMSW LPGLTQVTLY DATAKPQAER LVFVPEFVAP VRVLMGINKT 
RYQPREQVSL SVNLTDNGLP ALAALSASIT DADQVPDDTA EATLPAHLLL TGELRGRIEN 
PNQYVANHSA ETRRALDDLL LTQGWRRVTG TPETERLGGV SLRGRIVNAK NQPISGAQLM 
VAPTAGQSSI KSAGVDEQGR FRLAGLAIAD TVRLLTQITD RQFKNIPTKD AILVLEGPGK 
LWEYAKLPVA PNGPTLRSQL EAARIRQEAN AGFYRDKTAK VLKEVTVRAQ KFDKRPEDIQ 
QRSLHNEADA VLVVDEKSPA YQNLYEMIQG RLAGVTVTRE GAAVARSYKV FIRGVNSFKS 
GIQPLYLMDG IPIEDPDGTA LLFFSTSDIE RIELLKSAIT TGTYGARGGN GVIAFYTKSY 
RSMQGSEKLK EGMTPIQFIG YPSVQREFYV PHYDAEATTS PISGPVDNRD VLYWKPMMQT 
DSQGRSQLRF PLSDVVRTVR VVIQGVTADG RPVLGVQLIR VQ