| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_4809 |
|---|
| Symbol | |
|---|
| ID | 8728573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 5864106 |
|---|
| End bp | 5864927 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | Phytanoyl-CoA dioxygenase |
|---|
| Protein accession | YP_003389586 |
|---|
| Protein GI | 284039656 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00887466 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.569054 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTAGCTA TATCAAACAA CCGGATTGCC ACGCAGCCAA CACAATTATT GACAGCCGAT
GAACGGGCCT TTTTTGAAAA AAATGGATTT CTACATATCA AAAACTTCGT AAGCCGCGAC
ACTGTGCAGC TTTTTCTGCG CGAATTACAA CAGGTGGAAG CGGATTGGAT TGCCGAAAAA
GTTGACAAGA TCAACGGTAT CCCCATAAAA TTTGGCCGGG ATGAAAACGG CAAGCCTATT
GTTCAGCGGT TTGCGTTTAC CTCGCTGTTT AGCCCGGTCC TGCATGAGTT TTTACAGGAT
GAGCGCCTAA AGGAACTGAC TCAGTTATTA AAGCCATACG ATGGCCGTAT TGGCGAAGAA
GAGAAGGACG GATTGGTTGT GAATCACTAC GTTCGTACGC CGGAGAGCAA CTTCTCTAAG
ATGGGCTGGC ATACCGATAG CCCACGCGAT TTGTTCTTGG GGCAGCGGAT TCGGCCGATG
CTGAACGTGG GGCTACACCT CGACGACTGC CCCATGAGCA ACGGCGGGCT ACGCGTGCTG
CCGGGTACGC ACAAGCAAAA TACCCTGCTG ACGCTCTTCC GTAAACGTCA GTTCATCGAC
CACCGCCCCG ACCCGCGCGA AGTTGGGTTC GACATTGAAG CGGGCGATCT GACCATCCAC
AATGGTAGTC TGTGGCACCG CGTCGAGCAG TCGCCAAACG TGGGGGCCTC CAGCCGTCGC
CGGGTCATGT ATATTCCGCT GGTGACGGGC GAGTACCAGC CCAAAAATGC CGCCAGCAAG
ACGCCCTTCT ATCACCGGTT AGGCGCTAAA ATCTTTCGGT AA
|
|---|
| Protein sequence | MVAISNNRIA TQPTQLLTAD ERAFFEKNGF LHIKNFVSRD TVQLFLRELQ QVEADWIAEK
VDKINGIPIK FGRDENGKPI VQRFAFTSLF SPVLHEFLQD ERLKELTQLL KPYDGRIGEE
EKDGLVVNHY VRTPESNFSK MGWHTDSPRD LFLGQRIRPM LNVGLHLDDC PMSNGGLRVL
PGTHKQNTLL TLFRKRQFID HRPDPREVGF DIEAGDLTIH NGSLWHRVEQ SPNVGASSRR
RVMYIPLVTG EYQPKNAASK TPFYHRLGAK IFR
|
|---|
| |