Gene Slin_4672 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_4672 
Symbol 
ID8728436 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp5690576 
End bp5693401 
Gene Length2826 bp 
Protein Length941 aa 
Translation table11 
GC content53% 
IMG OID 
ProductPKD domain containing protein 
Protein accessionYP_003389449 
Protein GI284039519 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.612479 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGAAA TAATCGTATC ATTGTGTTTA AAATACGCTT TAGAAATGAC ATATAAACGT 
TATACCCTTC AATCGTTCCG AACGACGGCC TTGCTCAGTG TAGGCGCCCT AGGCTTATGG
GCCTACTCGA CGAGGTCGTT CACCGCTCCC GGCGATAAAC CCGACGAAAA TCGGTTTACA
AAGGTAGTAC TTGCCGAAAA ACTAAATGAG CCGCTCGAAA TGGCCATTCT ACCCGACGAA
CGCGTACTGT TTATCGAACG GCATGGGCAG GTTCAACTGT ATTCGCCAGG TACGAAACAG
GTGAAAACGA TTGCTTCAAT CCCGGTCAGC ACGAAATATA AAGATGTTGA AGGACATGAG
ACCGAAGCTG AAGATGGTTT GCTGGGCGTT AACATAGACC CCAACTTCGA GAAAAACCAC
TGGATATACC TATACTACTC ACCAGCGGGC AGCGAATCTA AGAACAGTCT GGTCCGCTAC
GAAATGCGGG GCGACGAACT GGTTCTATCT TCGAAAAAAG TGTTGCTGGA TGTACCCGTG
CAGCGCGAAC AATGCTGCCA TACCAGTGGC TCCATTGACT GGGACCGCGA AGGCAACCTC
TATCTCTCTA CCGGCGACAA CACCAGCCCC CGCGCCACGC TCTACGCACC TATTGACGAG
CGGCCCGGCC GGGGTCCTTG GGATGCCCAG AAGTCGTCGG GTAATACTAA TGATTTGCGG
GGTAAAATCC TCCGTATCCA TCCCGAAGCC GACGGAACTT ACACCATTCC CGAAGGAAAC
CTGTTTCCAA AAGGCACAAG CCAAACCCGT CCCGAGATCT ATACCATGGG CCACCGTAAC
CCCTACAGGA TTTCGGTAGA TAAGCATACA GGGTATGTGT ACTGGGGCGA TGTAGGCCCC
GACGCGGGCG AAGATTCGGT TGGGGTTGGC CCCACGGCCG AAGACGAATA CAACCAGGCG
CGAAAAGCGG GCAATTTCGG CTGGCCGTAT TTTGTGGGCG ATAATAAAGC CTATTACGAT
AAAGATTTCA CCACCGGAAA AGGAGGTGCC AAATTCGATC CGGCGCATCC GGTCAACGAT
TCGCCCAACA ACACGGGCCT GCGCGACCTC CCGCCTGCCC AGCCTGCGCT CATCTCTTAC
CCGGCTGCCG AGTCCAAAAA ATTTCCGATC ATGGGAACCG GTGGGCGTAG TGCTATGGCC
GGTCCTACCT ATTACAAAGA CGATTTCAAG AACGCCAAAC GCCCTTTCCC GGACTATTAT
AACGGAAAAG TATTTCTCTA TGAGTGGATG CGCGACATGA TTATGGCCGT TGACTTTGAT
GGCAAGGGTG GCATAACCAG CATGGAACGC TTTCTGCCCA ACATGGGCTT CAGTCACCCA
ATCGACATGG CGTTCGGGCC AAACGGTGAT TTATACGTGC TGGAATACGG CACCGGCTGG
TTCCTCAAAA ACGACGATTC GCGTTTGGTA CGCATTGAGT TCAACGCGGG CAATCGTAAG
CCTGCGATAC AGGTAGCGGC CAGTCAGAAG GCAGGGGCGG TACCGCTGAA AGTAGCCTTG
TCATCGGAGG GAACCAAGGA TTTCGATGGC GATGCGCTGA CCTATCAATG GAAAATAGTG
AGCCGAACGG GTGGTCAGCC AACCGTTCTG AATGAACCGA ACCCAACGTT CACGTTTCAG
AAACCGGGAC AGTATAAAGC GATACTGACA GTAACCGATG CGAAGGGTCT GAAAGATACC
CAGGAGGTGG ATATTGTAGC CGGTAACCAG CCTCCGCAGG TAGCCCTGAA CGTAGTGAAC
GGCAATAAGA GCTTCTATTT CCCCGGCCAG CCGGTGGCTT ATCAGGTAAA CGTGACCGAT
AAGGAAGATG GTAGCCTGGC GAGTGGACGC ATTCAGCCTA AACAAGTGCT GGTTCGGGCT
ACGTATCAGG ATGACGCCAA CGCACAGGCC GCGAGTACAT CCGGTGCTGG ACACAAATTC
TCCGAGGCCG CTTACCTGGG GACCGGGCAA ACGCTCATGG AAAAAAGTGA CTGCAAAGCC
TGCCATTTTA CGGATAAAAA ATCGGTAGGA CCCGCGTTTA CGGAAGTAGC GAAACGGTAC
AAAGCTGATG CCAACGCCGT GGCGAGCCTA TCGAATAAGA TCATCAAAGG GGGGGGTGGC
GTTTGGGGCG ATGCCATCAT GACGGCCCAC CCTCAACTGA CTCAGCCCGA CGCGAGCGAA
ATTGTCAAGT ATATCCTGAC CCTTTCCGAC AAGAAAGTGA CAGCCCCGCT GCTCCCGACG
AAGGGAACCT ATACGCCGGG TAAAGACGAA AAAGGAAATC TGGTTTTGCA GGCCTCTTAC
AAAGATAAAG GAGCTAACGG CCTGCCTGCC CAACTGGCCG AACAGGTACT GGTGCTACGG
AATCCGCTGA TCGCGCTGGG CACATCCAAT AGCCAGTCGA AAGGCATCAC ACTGTTCAAA
ATGGGCACTC AGCCTTACCC GCTTGTGGTT GTCATGGGTT CCGACACCTA TGTCAAATTT
AACCAGCTCG ACCTTACCGG TATCCGATCC ATGGAGTTTG CCGTAGCCGC CCCTAAAGCG
CAGTTGAACG CTATGGGTGG TCGAATTGAA GTACGGATTG ACTCCCCAAC GGGCCAACTG
CTGGGCCAGA CGGCAGAGGT TGCGCCCAAT GAAAGCAAAG ACCCGGCCGC CATGTTTACG
CCAACTATGG CCAAAGCAGC CATTATTCCA ACAACGGGCC AGCACGACCT GTACTTCGTT
TTCAAAAACG AGAAGGCCGG AAAAGCCCCT CTTTTCGTAC CCAGTACGGT TCAACTTTCC
AACTAA
 
Protein sequence
MKEIIVSLCL KYALEMTYKR YTLQSFRTTA LLSVGALGLW AYSTRSFTAP GDKPDENRFT 
KVVLAEKLNE PLEMAILPDE RVLFIERHGQ VQLYSPGTKQ VKTIASIPVS TKYKDVEGHE
TEAEDGLLGV NIDPNFEKNH WIYLYYSPAG SESKNSLVRY EMRGDELVLS SKKVLLDVPV
QREQCCHTSG SIDWDREGNL YLSTGDNTSP RATLYAPIDE RPGRGPWDAQ KSSGNTNDLR
GKILRIHPEA DGTYTIPEGN LFPKGTSQTR PEIYTMGHRN PYRISVDKHT GYVYWGDVGP
DAGEDSVGVG PTAEDEYNQA RKAGNFGWPY FVGDNKAYYD KDFTTGKGGA KFDPAHPVND
SPNNTGLRDL PPAQPALISY PAAESKKFPI MGTGGRSAMA GPTYYKDDFK NAKRPFPDYY
NGKVFLYEWM RDMIMAVDFD GKGGITSMER FLPNMGFSHP IDMAFGPNGD LYVLEYGTGW
FLKNDDSRLV RIEFNAGNRK PAIQVAASQK AGAVPLKVAL SSEGTKDFDG DALTYQWKIV
SRTGGQPTVL NEPNPTFTFQ KPGQYKAILT VTDAKGLKDT QEVDIVAGNQ PPQVALNVVN
GNKSFYFPGQ PVAYQVNVTD KEDGSLASGR IQPKQVLVRA TYQDDANAQA ASTSGAGHKF
SEAAYLGTGQ TLMEKSDCKA CHFTDKKSVG PAFTEVAKRY KADANAVASL SNKIIKGGGG
VWGDAIMTAH PQLTQPDASE IVKYILTLSD KKVTAPLLPT KGTYTPGKDE KGNLVLQASY
KDKGANGLPA QLAEQVLVLR NPLIALGTSN SQSKGITLFK MGTQPYPLVV VMGSDTYVKF
NQLDLTGIRS MEFAVAAPKA QLNAMGGRIE VRIDSPTGQL LGQTAEVAPN ESKDPAAMFT
PTMAKAAIIP TTGQHDLYFV FKNEKAGKAP LFVPSTVQLS N