Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_4658 |
Symbol | |
ID | 8728422 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | - |
Start bp | 5671381 |
End bp | 5673426 |
Gene Length | 2046 bp |
Protein Length | 681 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | |
Product | alpha amylase catalytic region |
Protein accession | YP_003389435 |
Protein GI | 284039505 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTCTAC CCAATTCTCT TGCTGATCGG CCCGACTTTG GCCAATCACG CGTAGTTATC GAACGTGTAA GCCCCGAAAT AGACGGTGGC CTGTTTCCCA TAAAAGCCAT TCCCGGCGAT GTGATCGCGG TTGAAGCCGA CATTTTCGCG GATGGACACG ATTACCTGAC GGCCCTTCTG CTGTATAAGC ACGTCGACGA TGCCACCTGG ACGGAACTGG CCATGGCTCC CTCCTGGAAT GATCGCTGGG GAGCTTCGTT CATTGTTGAA AAACAGGGAC GTTACCTGTA CACCTTTGAA GGGTGGGTCA ACCATCCGGC TTCGTGGCAG CACGAGGTGC ACCTGAAAGT AGCCGATGGG CAGCGAATCA CGAGCGAGTT GCTGGCCGGT GCCAAATACA TTGATGGCAT GATCGAGCGG GCGGGTGGCC AGTCGGCTGC CCTTCAGGTA AAAGGAAAGG GCAAAAAGAA AGCCGAGCCG GTCGACGAAT CGGCCGATGT GCGGGCACTG CGCGAAATGG CCGCCCTCTT TCGCGATGAG AGCCGGTACG ACGAAGCCGT ATCCGTTGCC GAAAGTGATC AGTTTACGTT TTACGCGAAC CGCTATCCCG AGCGCCAGTA CCCAACCCGC TACGCCCACG AACTCGGCGT TGAGGTTGAT CGGGCGCGGG CGGGTTTCAG CACCTGGTAT TGCCTGTTTC CACGGTCGGC CTCCCGCGAG CTAGCCGGTG GCGCACCCGT TCATGGCACG TTTAGGGATG TAGAGGCCCT GTTGCCGCGC ATCTCGAACA TGGGTTTCGA CGTGCTATAT CTGCCGCCTA TTCACCCCAT AGGCACGGCA CACCGCAAGG GGAAGAATAA CTCGGTTATC TGTCAGCCGG GCGAGCCGGG CGTTCCCTAT GGCATTGGCT CTGAAGAAGG CGGCCACGAT GCCATTCACG CCGAACTGGG TACAGTCGAG GATTTCAAAC ACCTGATTGC CATTGCGAAA AACTACGGGA TGGAAGTCGC CATGGACCTG GCCATTCAGT GTTCGCCCGA CCACCCGTGG GCGAAAGAAC ACCCGGAATG GTTTAAAAAA CGACCCGATG GCACCATTCA GTACGCCGAA AACCCGCCCA AAAAGTACCA GGATATTTAC CCCGTTTATT TTGAAACGGA AGACTGGCAA AACCTCTGGG AAGAGTTAAA GCGGGTGCTG CTGGTCTGGT GTTCGTGGGG TGTTCGCATC ATTCGGGTCG ATAATCCGCA CACGAAGCCA TTCGTTTTCT GGGAGTGGGT CATTGCGGAG GTTAAGAAAG AGTATCCGGA TATGATTTTC CTGTCGGAAG CGTTTACCAA GCCTCGGGTG ATGCAGGAGT TAGCCAAACG TGGGTTTGCG CATTCGTACA CCTACTACAC CTGGCGCAAC ACCAAAGCCG AGCTGGAGGA ATACATGACC GAGCTGACAC AGGGCGAAAT GAAGCATTAC TTCCGTCCCA ATTTCTGGCC TACGACGCAC GATATTAATC CATACAGCTT ACAGTCGGGA CATGAACCTC AGTTTCTGAT TCGCTATTTC ATGGCGGCCA CACTGTCGAG CAATTACGGT ATTTACGGCC CGTCGTTTGA GTTAATGGAG CACATTCCGT TCCCAAATAA AGAAGAGTAT CTGAACTCCG AAAAGTACGA GATCCGGCAC TGGGACTGGG ATAAGACCAA CAAACTAACG TATCTGATTA CGCTCGTCAA CCGTATCCGT CGCGAAAATG CAGCCCTGCA AACCACCAAT AATATCACCT TCTGTTCCGT CAATGATGAC GCCATCATGG CTTATCTGAA AGTTTCGGGC AGCAACCGTC TGCTGGTGGT GGTTAATACC GACGCGTACC AGCGTCGGGC GGGCATGGTA CAGGTACCCA TCTGGCAACT GGGCATCGGG AATGATCAGA CCTACAAAGT CCGCGATCTG CTCACCGAAG CTTATTATAC CTGGAAGGGC GAATCCAACT ACGTAGAACT CGACCCCTAT GTGCTGCCCA TGCACCTGTT TAAGATAGAG GTGTAG
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Protein sequence | MSLPNSLADR PDFGQSRVVI ERVSPEIDGG LFPIKAIPGD VIAVEADIFA DGHDYLTALL LYKHVDDATW TELAMAPSWN DRWGASFIVE KQGRYLYTFE GWVNHPASWQ HEVHLKVADG QRITSELLAG AKYIDGMIER AGGQSAALQV KGKGKKKAEP VDESADVRAL REMAALFRDE SRYDEAVSVA ESDQFTFYAN RYPERQYPTR YAHELGVEVD RARAGFSTWY CLFPRSASRE LAGGAPVHGT FRDVEALLPR ISNMGFDVLY LPPIHPIGTA HRKGKNNSVI CQPGEPGVPY GIGSEEGGHD AIHAELGTVE DFKHLIAIAK NYGMEVAMDL AIQCSPDHPW AKEHPEWFKK RPDGTIQYAE NPPKKYQDIY PVYFETEDWQ NLWEELKRVL LVWCSWGVRI IRVDNPHTKP FVFWEWVIAE VKKEYPDMIF LSEAFTKPRV MQELAKRGFA HSYTYYTWRN TKAELEEYMT ELTQGEMKHY FRPNFWPTTH DINPYSLQSG HEPQFLIRYF MAATLSSNYG IYGPSFELME HIPFPNKEEY LNSEKYEIRH WDWDKTNKLT YLITLVNRIR RENAALQTTN NITFCSVNDD AIMAYLKVSG SNRLLVVVNT DAYQRRAGMV QVPIWQLGIG NDQTYKVRDL LTEAYYTWKG ESNYVELDPY VLPMHLFKIE V
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