Gene Slin_4658 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_4658 
Symbol 
ID8728422 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp5671381 
End bp5673426 
Gene Length2046 bp 
Protein Length681 aa 
Translation table11 
GC content54% 
IMG OID 
Productalpha amylase catalytic region 
Protein accessionYP_003389435 
Protein GI284039505 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCTAC CCAATTCTCT TGCTGATCGG CCCGACTTTG GCCAATCACG CGTAGTTATC 
GAACGTGTAA GCCCCGAAAT AGACGGTGGC CTGTTTCCCA TAAAAGCCAT TCCCGGCGAT
GTGATCGCGG TTGAAGCCGA CATTTTCGCG GATGGACACG ATTACCTGAC GGCCCTTCTG
CTGTATAAGC ACGTCGACGA TGCCACCTGG ACGGAACTGG CCATGGCTCC CTCCTGGAAT
GATCGCTGGG GAGCTTCGTT CATTGTTGAA AAACAGGGAC GTTACCTGTA CACCTTTGAA
GGGTGGGTCA ACCATCCGGC TTCGTGGCAG CACGAGGTGC ACCTGAAAGT AGCCGATGGG
CAGCGAATCA CGAGCGAGTT GCTGGCCGGT GCCAAATACA TTGATGGCAT GATCGAGCGG
GCGGGTGGCC AGTCGGCTGC CCTTCAGGTA AAAGGAAAGG GCAAAAAGAA AGCCGAGCCG
GTCGACGAAT CGGCCGATGT GCGGGCACTG CGCGAAATGG CCGCCCTCTT TCGCGATGAG
AGCCGGTACG ACGAAGCCGT ATCCGTTGCC GAAAGTGATC AGTTTACGTT TTACGCGAAC
CGCTATCCCG AGCGCCAGTA CCCAACCCGC TACGCCCACG AACTCGGCGT TGAGGTTGAT
CGGGCGCGGG CGGGTTTCAG CACCTGGTAT TGCCTGTTTC CACGGTCGGC CTCCCGCGAG
CTAGCCGGTG GCGCACCCGT TCATGGCACG TTTAGGGATG TAGAGGCCCT GTTGCCGCGC
ATCTCGAACA TGGGTTTCGA CGTGCTATAT CTGCCGCCTA TTCACCCCAT AGGCACGGCA
CACCGCAAGG GGAAGAATAA CTCGGTTATC TGTCAGCCGG GCGAGCCGGG CGTTCCCTAT
GGCATTGGCT CTGAAGAAGG CGGCCACGAT GCCATTCACG CCGAACTGGG TACAGTCGAG
GATTTCAAAC ACCTGATTGC CATTGCGAAA AACTACGGGA TGGAAGTCGC CATGGACCTG
GCCATTCAGT GTTCGCCCGA CCACCCGTGG GCGAAAGAAC ACCCGGAATG GTTTAAAAAA
CGACCCGATG GCACCATTCA GTACGCCGAA AACCCGCCCA AAAAGTACCA GGATATTTAC
CCCGTTTATT TTGAAACGGA AGACTGGCAA AACCTCTGGG AAGAGTTAAA GCGGGTGCTG
CTGGTCTGGT GTTCGTGGGG TGTTCGCATC ATTCGGGTCG ATAATCCGCA CACGAAGCCA
TTCGTTTTCT GGGAGTGGGT CATTGCGGAG GTTAAGAAAG AGTATCCGGA TATGATTTTC
CTGTCGGAAG CGTTTACCAA GCCTCGGGTG ATGCAGGAGT TAGCCAAACG TGGGTTTGCG
CATTCGTACA CCTACTACAC CTGGCGCAAC ACCAAAGCCG AGCTGGAGGA ATACATGACC
GAGCTGACAC AGGGCGAAAT GAAGCATTAC TTCCGTCCCA ATTTCTGGCC TACGACGCAC
GATATTAATC CATACAGCTT ACAGTCGGGA CATGAACCTC AGTTTCTGAT TCGCTATTTC
ATGGCGGCCA CACTGTCGAG CAATTACGGT ATTTACGGCC CGTCGTTTGA GTTAATGGAG
CACATTCCGT TCCCAAATAA AGAAGAGTAT CTGAACTCCG AAAAGTACGA GATCCGGCAC
TGGGACTGGG ATAAGACCAA CAAACTAACG TATCTGATTA CGCTCGTCAA CCGTATCCGT
CGCGAAAATG CAGCCCTGCA AACCACCAAT AATATCACCT TCTGTTCCGT CAATGATGAC
GCCATCATGG CTTATCTGAA AGTTTCGGGC AGCAACCGTC TGCTGGTGGT GGTTAATACC
GACGCGTACC AGCGTCGGGC GGGCATGGTA CAGGTACCCA TCTGGCAACT GGGCATCGGG
AATGATCAGA CCTACAAAGT CCGCGATCTG CTCACCGAAG CTTATTATAC CTGGAAGGGC
GAATCCAACT ACGTAGAACT CGACCCCTAT GTGCTGCCCA TGCACCTGTT TAAGATAGAG
GTGTAG
 
Protein sequence
MSLPNSLADR PDFGQSRVVI ERVSPEIDGG LFPIKAIPGD VIAVEADIFA DGHDYLTALL 
LYKHVDDATW TELAMAPSWN DRWGASFIVE KQGRYLYTFE GWVNHPASWQ HEVHLKVADG
QRITSELLAG AKYIDGMIER AGGQSAALQV KGKGKKKAEP VDESADVRAL REMAALFRDE
SRYDEAVSVA ESDQFTFYAN RYPERQYPTR YAHELGVEVD RARAGFSTWY CLFPRSASRE
LAGGAPVHGT FRDVEALLPR ISNMGFDVLY LPPIHPIGTA HRKGKNNSVI CQPGEPGVPY
GIGSEEGGHD AIHAELGTVE DFKHLIAIAK NYGMEVAMDL AIQCSPDHPW AKEHPEWFKK
RPDGTIQYAE NPPKKYQDIY PVYFETEDWQ NLWEELKRVL LVWCSWGVRI IRVDNPHTKP
FVFWEWVIAE VKKEYPDMIF LSEAFTKPRV MQELAKRGFA HSYTYYTWRN TKAELEEYMT
ELTQGEMKHY FRPNFWPTTH DINPYSLQSG HEPQFLIRYF MAATLSSNYG IYGPSFELME
HIPFPNKEEY LNSEKYEIRH WDWDKTNKLT YLITLVNRIR RENAALQTTN NITFCSVNDD
AIMAYLKVSG SNRLLVVVNT DAYQRRAGMV QVPIWQLGIG NDQTYKVRDL LTEAYYTWKG
ESNYVELDPY VLPMHLFKIE V