Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_4589 |
Symbol | |
ID | 8728353 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | + |
Start bp | 5562445 |
End bp | 5563122 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | |
Product | ABC transporter related protein |
Protein accession | YP_003389367 |
Protein GI | 284039437 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.00504379 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATCCAGA CAATTAACCT TCAAAAACTC TTTTCGACCG AAGAAGTCGA AACCACCGCC CTCAACGGCA TCAACATGGA TGTGAAAGAC GGCGAGTTCG TTGCCATCAT GGGGCCATCG GGCTGCGGCA AATCCACGCT GCTTAACATC CTGGGTCTAC TGGATAACCC CAGCGAAGGC GAGTACAATT TCTACGGCAC GGAGGTCGCC AAAATGACCG AACGTCAGCG GGCGCAACTC CGCAAAGGCT CCATCGGCTT CGTGTTCCAG AGCTTTAACC TGATCGACGA ACTGACCGTA TATGAGAACG TCGAGCTGCC CTTGCTGTAC CTGAAAACGC CCCCCGACGA GCGGAAGAAG CGCGTAGAAG AGGCCTTGGA ACGGATGAGC ATCATGCACC GGCGCAATCA CTTCCCGCAG CAGCTTTCGG GTGGTCAGCA GCAGCGGACG GCCATCGCAC GGGCGGTTGT TGCCAAACCC AAGCTGATCC TGGCCGATGA ACCGACGGGT AACCTCGACT CGAAGAATGG CGAAGAAGTA ATGAAACTAT TGGGCGAACT GAACGACGAA GGCACCACGA TTATCATGGT AACCCACTCA CCCTACGACG CCGGTTTCGC GCATCGCATT GTGAACTTGT TTGATGGTAA GGTGGTCACG GAAAATTTCC ACGTGTAG
|
Protein sequence | MIQTINLQKL FSTEEVETTA LNGINMDVKD GEFVAIMGPS GCGKSTLLNI LGLLDNPSEG EYNFYGTEVA KMTERQRAQL RKGSIGFVFQ SFNLIDELTV YENVELPLLY LKTPPDERKK RVEEALERMS IMHRRNHFPQ QLSGGQQQRT AIARAVVAKP KLILADEPTG NLDSKNGEEV MKLLGELNDE GTTIIMVTHS PYDAGFAHRI VNLFDGKVVT ENFHV
|
| |