| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_4475 |
|---|
| Symbol | |
|---|
| ID | 8728235 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 5418244 |
|---|
| End bp | 5421111 |
|---|
| Gene Length | 2868 bp |
|---|
| Protein Length | 955 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_003389254 |
|---|
| Protein GI | 284039324 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACACC TCTTTTTACT TTCATTTTTA TGGTTACTTG GCCCTGTTTC ATCCTGGGCA
CAGACGAATC TGGCAGGTCT TGTTACCGAT GAAAAGAATC AGCCTCTGGC GGGTGTAACA
ATTATCATCC GGGGTACCAA TACCGGCACT ATTACACAGG CCAACGGGCA GTTTTCGCTT
CAAACCAACG AATCACTCCC GCTAACGATA ACAGCTTCCT TTATCGGCTA CAAACGTCAG
GATGTGGTTG TCCGGGGCAA CAACTTTCGA ACTATTTCTA TTCGTCTTGG CGAAGAGGCA
ATCTTGACGG ATGAGGTAGT TGTATCGGCG AGCCGTGTAC CGGAGGATAT TCAAAAAGCG
GCCGTAACCG TTGAGAAGTT GGGCGCAAGG CAGTTTCAGC AGTCACCGGC AACGAGTCCG
TTCGATGCGC TGCAAAATGT GAAAGGCGTC GATTTGCTCA CCCAAAGTCT AACCTTCAAG
TCCGTTAACC TGAGGGGCTT TGGAGCCAAT AACAATAACC GTTTTCTGCA ATTGACCGAT
GGGATGGATA ACCGCTCGCC GGGTCTGGGC TTTGGCTTTG GTAACGTAGC TGGCGTTTCT
GATCTGGATG TTGAAAGTAT TGAACTGATT CCGGGTGCAT CGTCGGCCTT ATACGGACCT
GATGCCCTTC AGGGATTAAT GCTGACAACC AGCAAGAACC CTTTTACCTA TCAGGGCTTG
AGCGTTCAGT TAAAAGTAGG GGCTAATAAC TTCGGCAAAG GAAGCTTCGG GCCAAAAGGC
TACGGTGATA TTGCCGTACG ATATGCGAAA CAACTGGGTG CCCGGTTTGC CGTGAAAATC
AATTTCCAGC GGCTTAGCGG TACGGATTTC ATTGCCGACG ACTACAGCGA CCGATCTACT
CGCGCCCGTG CTAATTTCTT CACGACTGAT CCATCACGGG GCGGTCTGGC TACCGGCATT
GGGTTTGTCC CCAACAACGA CCCAAATACA AATTTTCAAT ACGACGGAGT CAACATATAC
GGTGATGACA TCAATGCTGG CGGAGCTTAC AGCTTCCCGG CCAATTATGC GAACGTATTA
CTGCAAAACA AACTGGCAAC GCGCACCGGC TACACCGAAC TGGATGTGCT GGGCAATAAT
GGTAAGGTCT TTAACAACCG GGCTAATGTA TCCCTGCATT ACAAACTACC CGGTAACATG
GAAGCCTCGT TGGGCTGGTA TTATGGTAAT GGTAACTTCA TTCGTACAGC AGGTTTTCGG
GAGTATTTTC CGGATTATCA GCGGCACCAG ATCAAAGCCG AATTGCGGGG CGATAACTTC
TTTGTACGGG CATATACGAC TCAACAACAG GCTGAAGGCT GGAATATTGG CCAGACAGCT
ACCGCCATCA ACAACAGCTG GAAATCGCTG GGACAATGGG CTGCTGAATT CGGGCAGGCT
TACGTAGAGA ACAAAGTCAG TGTAGGCGAA GCGCGCAACA CAGCCGACCG GGGCCGCTAC
CTGCCCGGCT CTGACCGATT CAACCTTGTT CGCGATGCAT TTGCCAATAC GTACAATACT
GATACTGTGC CAGGCTACAA AGGCGCAAGA GGAACCCGGT TCCGCGATAA TTCTGCGATG
TGGCATTATG AGGGAATGTA TAACTTGACG AAAGCCCTGA ATAGCATAGC CGAAGTAATT
GCAGGCGGCA GCCTTCGTCA CTATGGATTG AATACAGGCG GCACCGCCGT TACGTTAAAA
GCCGATGGTT CGGAATATAC CATTAACGAA TACGGAGCGT ATGTTCAGGC GGCTAAAGAG
CTAAAGGTTG GTACCCTGGT AACCGTTAAA CCAACCGTCG CCATTCGGTA CGACAAGAAC
CAGTACTTTA AAGGTGGATT CACTCCCCGT GCATCAGCCG TGGTGAGCGT TGGCCCTCAT
AACTTCCGGG GTTCCTGGCA ATCGGCCTTC CGGAATCCAT CTCCCGGACA GTTATTCGCT
GTTCCGGCCG CCGGTCGAGG GGGCGATGTG GGCGGTGCGC AACTGGCAGC CGAGTCGGCA
GGACTATTTA CAAACCCGGC TTATCTAGAC AGCGATGTTA AGGATTATAC AGCCGGTCGG
CTTTCCGAAG CGCAGTTACG GACTCGTGCC TACAACCCGG CTAACTTCAC CACGGAGAAG
ATAAAGACTT GGGAGGTAGG CTATAAAACG CTGATACAAA ACAGGCTTTA TGTCGACGCC
TTCTACTTCC ACAGCAAATA CACGGATTTC ATTGCCGCTC AGAGCTTTTA CCAACCCAGC
AACGGGCAGA TTGCTGACTT CGCGTCGAAT GCCTATCGGA CGCTGCAAAT CAACTTTAAT
AACTTCAACG AGATCTTCGT AAATGGCTGG GGTATTGGGT CAGAGTATGG TCTTGGCCGG
GGCTTTACCA TCAGTGGAAA TTACGCTTAT CAGGTCGGCA CCGTCACACT GCGTGACGCA
CAGGGAAACG TGATTAATGA CAATGCAGGA AGCCCGATTG TAAAGCGAAA AATGAGCAAT
CCCGAAGTAT CGCAGAAGGG CCGTAACTTC TTTATCTCGC CCGAAAACCG GTATAACCTT
ACGCTGAGCA ACTCACGCCT GACAGATCGG CTGGGAGCCA CAATCACCTA TCGCTGGACC
GACAGAATGT GGGTTGAGCA GGGCACAACG GCTGGCGACA TCTGGCTTCC CTCCTGGACA
AGTCTAGACG CTCAGGTTTC GTACAAAGTG CCAACCTTCA AATCAGTGGT GAAACTCGGG
GGTACCAACC TTCTGAATCA ATACTACGCG CAGGGATACG GGCTGGCCCG TATAGGTGGT
TTGTACTATT TAAGCATTAC GTTTGATGAA TTGATGCGGC AAATGTAG
|
|---|
| Protein sequence | MRHLFLLSFL WLLGPVSSWA QTNLAGLVTD EKNQPLAGVT IIIRGTNTGT ITQANGQFSL
QTNESLPLTI TASFIGYKRQ DVVVRGNNFR TISIRLGEEA ILTDEVVVSA SRVPEDIQKA
AVTVEKLGAR QFQQSPATSP FDALQNVKGV DLLTQSLTFK SVNLRGFGAN NNNRFLQLTD
GMDNRSPGLG FGFGNVAGVS DLDVESIELI PGASSALYGP DALQGLMLTT SKNPFTYQGL
SVQLKVGANN FGKGSFGPKG YGDIAVRYAK QLGARFAVKI NFQRLSGTDF IADDYSDRST
RARANFFTTD PSRGGLATGI GFVPNNDPNT NFQYDGVNIY GDDINAGGAY SFPANYANVL
LQNKLATRTG YTELDVLGNN GKVFNNRANV SLHYKLPGNM EASLGWYYGN GNFIRTAGFR
EYFPDYQRHQ IKAELRGDNF FVRAYTTQQQ AEGWNIGQTA TAINNSWKSL GQWAAEFGQA
YVENKVSVGE ARNTADRGRY LPGSDRFNLV RDAFANTYNT DTVPGYKGAR GTRFRDNSAM
WHYEGMYNLT KALNSIAEVI AGGSLRHYGL NTGGTAVTLK ADGSEYTINE YGAYVQAAKE
LKVGTLVTVK PTVAIRYDKN QYFKGGFTPR ASAVVSVGPH NFRGSWQSAF RNPSPGQLFA
VPAAGRGGDV GGAQLAAESA GLFTNPAYLD SDVKDYTAGR LSEAQLRTRA YNPANFTTEK
IKTWEVGYKT LIQNRLYVDA FYFHSKYTDF IAAQSFYQPS NGQIADFASN AYRTLQINFN
NFNEIFVNGW GIGSEYGLGR GFTISGNYAY QVGTVTLRDA QGNVINDNAG SPIVKRKMSN
PEVSQKGRNF FISPENRYNL TLSNSRLTDR LGATITYRWT DRMWVEQGTT AGDIWLPSWT
SLDAQVSYKV PTFKSVVKLG GTNLLNQYYA QGYGLARIGG LYYLSITFDE LMRQM
|
|---|
| |