Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_4444 |
Symbol | |
ID | 8728204 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | + |
Start bp | 5385376 |
End bp | 5388510 |
Gene Length | 3135 bp |
Protein Length | 1044 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | |
Product | Cation/multidrug efflux pump-like protein |
Protein accession | YP_003389224 |
Protein GI | 284039294 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00034162 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCATA GCTACCAGTT CATCCTGCTG TTTACCATCT TGTCGGTCAT GGGAGTGACG TTGTTGCCCC GGCTGTCGGT GCAATTAGCG CCTTCGCCGG GAGGGCGTTC TATTACAGTG AGTTATCCCT GGCGGGGAGC CGCACCAGAG GCCCTTGAAC GGCAAGTATC GTCTCGCCTG GAAGGCGCCT TTAGTACACT GGCCAACATT AAAAAAGTGA GGTCGGTGTC GGCTTACAAC CGAGGGTATG TTACCATTGA ATTGGATCGT TCGGCCGATG CCGACGCCCT GCGCTTCGAA CTGGCCGCGC TGGTTAGGCA GGTGTACCCC AAACTCCCGC CTGATGTTTC TTATCCTCAA ATTAGCCTGA ATGCTCCCGA TGAGCAGAGC CAAACCAAAC CGCTGCTTAC CCTTCAACTG AGCGGCCCCA GTTCTACTGC CGAGTTGCAA CGCTATGCCA ACGAACAACT AAAGCCCCGG CTGGCCGCAA CAGAGGGCGT TGGTAGCGTG GCTGTGTTTG GGGGCACCCA ACCCGAATGG GTCCTTACCT ACAACGCCGA TGCACTGGCT ACCCTGCAAC TAACGGAGAA CGACCTGCGG GTGGCCGTAC AGCATTATTT TCAGCGTGAA CCTCTGGGCA AGGTTGTTTC GGCAACCGGG CAGACGTTGC GCATTCGGCT GGATAATACA GTACAAAATG GCACCAACCA CTGGTCGCAG ATTCCGGTAG CCAATCGGGC CGGGCGGATC ATTTACCTGA CCGATCTGGT GAGCGTAAGT CGGCAGGAAC CACCGTCCGA CCAGTTTTAT CGCATCAATG GCAAAACAGC CGTAAACATG GTGCTAACAG CTGCAGCAGG GGCCAATCAG CTAACGGTTG CGCAGACACT AAACCGGCAG GTAGCGGAAC TGAACTTACC GCCCGGCTAC CGCCTGGATG TCGATTATGA TGCCACGGTG TACATTCGGG AAAACCTGCG TAAAATTGGC ATTCAGACCA GTGTAGCCAT TGTTATTTTA TTGCTGTTTG TTGCCCTGAC AACACGGAAC TGGTACTATG TGCTCTTGAT CGTGACCAGC ACCGTTGTGT CGTTACTGCT GTCTGTCCTG GTTTTTGTTT GGCTACGGGT CGAGATTCAC CTCTATTCCC TGGCTGCGCT GACGACATCG TTAGGTATTG TGATGGACAA TGTCATCGTG ATGATTGACC ATTACCGCCG ATACCGTGAC CTGCGCGTTT TTACGGCCCT GCTAGGTGCC ACCCTCACCA CCTGCGCCGG CCTGGTGGTT GTCTGGTTTC TGCCCGAAGA AAACCGCCAG GCCATGAGCG ATTTTTCGGT CGTGATGGCC GTTACCCTGT TTATTTCCCT GCTGGTCGCT ATGGCGTTTA CGCCTGCTAT GATGGAGCAG TTCTGGCCAA AAGCACAGGA AGGGCAGGAG AGAATTATCC AAAAGCAGAC AAAAACTGCC AGACAGAAGC TTTGGGGAGA GCAATTTTAT GGACGTGTCA TCCGTCTGCT GCTGCGGTAT CGGCGGTGGG CGCTTGCGGG GGCTGTTCTC CTGTTCGGTC TGCCTGTGTT CTGGTTACCA ATTACCTTAG ACTCAAAGAA CCCGCTGGCT CCTTATTACA AAGCCACGAT AGGCAGCGAC CTGTATGCCG ACAACCTGCA ACCGTATGTC AACAAGTGGT TAGGGGGCAC GCTTCGGCTG TTTGTCAATT ACGTATATGA AGGATCATAC CAGCGTGAGC CCGAACGTAC AGCCCTATAC GTTATTGCTG AGTTACCTAA CCAAAGTACG CCCGAACAAA TGGATGCTAT CTTCCGGCGG TTTGAGTCTA CCTTAGGCCA ATATGGAGAA ATTGACAAAT TTATTACCCA GATTAACAAT GGGCAGGAGG GCAATATGGT TGTTTACTTC AAACAGTCGC ACGATACGGA AATTTTCCCC TATCAATTGA AGAACCGGGG TATCCTGCTT TCAACCGAAA TGAGTGGTAT CGACTGGAAT ATTTATGGTG TGGGACAGGG ATTTAGCCAG AGTCTGAACG AAGACGAATC GTCCACCTTC AATGTCGAGC TGTTTGGCTA TAATTACCGG CAGTTGGAGC AACAGGCCAC GCTACTGAAA CAAATGCTGG AGAGCCACCC CCGCATTCAG GAGGTCAATA TCAACCGCAG CCCTAACCTG TTTCAGCGAA AGCGACTCTA TGAATTTGTC CTACAAACCG ACCCTCAGTT GCTGGCACTG CGGGGCATCG GCGCTTCCCA ACTCTATGAA CGTCTGGCCG ACCTCAACGC CCGCCCCCAA CCCGACCAGT ATGCATTCAT CAACGGAGAC TACGAACCTG TTAAACTGAT TCCTGTTCAA AGCCGAAGCG TAGATGTCTG GCAATTACAG AACCAACCGC TAACGGTTGG CTCAGGGTCA GCCCATCTGC GCGATATTGG CACTATTACC CGGCAGAAAG TTACCCCCGA AATTCATAAG GAAGACCAGC AGTACAAACG ACTGGTTAGC TTTGAATACT TTGGCAGCTA TAATTTCGGT GAGACGTTTC TGACCAAAAC TCTCGACGAA CTACGGCTAC AAATGCCGCT TGGCTACACG GCCAAAGCGG TAGACCGCTT CTGGTTTGGC ACTGACCAAC GAACTCCCTA CGAATTAATT GGGCTGGTTG TCCTGATAAT CTACATCATT TGCGCGATAA TTTTCGAGAG TTTATGGCAA CCCCTGGCCC TCATCGGGCT GATTCCGCTA TCGTACATCG GTGTGTTTTT AGCCTTTTAC TGGACAGACA GTAATTTTGA TCAGGGCGGC TACGCATCGT TTATTTTGCT GGCGGGCAAT GTTGTTTGTG CGGGCATCTT TATCGTGGCC GAAACAAACC GGCTTGGCAA GCGGTACCCC AATCTGTCGT CATTTACAGT TTATCAAAAA GCAGTCAGGC ATAAAATTGG CCCAGTATTG CTGACCGTCT TATCTACCGT AGTCGGGATG GTTCCATTTC TGCTGTATGA GCAGGAAGCT TTCTGGTATG CGCTGGGTAT TGGCACCATT GGCGGCTTAC TTATGTCCCT TGTCGCTGTA GGAATTTATT TACCTGTATT TTTATTGCCC CAAAATCAGG TCTAA
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Protein sequence | MRHSYQFILL FTILSVMGVT LLPRLSVQLA PSPGGRSITV SYPWRGAAPE ALERQVSSRL EGAFSTLANI KKVRSVSAYN RGYVTIELDR SADADALRFE LAALVRQVYP KLPPDVSYPQ ISLNAPDEQS QTKPLLTLQL SGPSSTAELQ RYANEQLKPR LAATEGVGSV AVFGGTQPEW VLTYNADALA TLQLTENDLR VAVQHYFQRE PLGKVVSATG QTLRIRLDNT VQNGTNHWSQ IPVANRAGRI IYLTDLVSVS RQEPPSDQFY RINGKTAVNM VLTAAAGANQ LTVAQTLNRQ VAELNLPPGY RLDVDYDATV YIRENLRKIG IQTSVAIVIL LLFVALTTRN WYYVLLIVTS TVVSLLLSVL VFVWLRVEIH LYSLAALTTS LGIVMDNVIV MIDHYRRYRD LRVFTALLGA TLTTCAGLVV VWFLPEENRQ AMSDFSVVMA VTLFISLLVA MAFTPAMMEQ FWPKAQEGQE RIIQKQTKTA RQKLWGEQFY GRVIRLLLRY RRWALAGAVL LFGLPVFWLP ITLDSKNPLA PYYKATIGSD LYADNLQPYV NKWLGGTLRL FVNYVYEGSY QREPERTALY VIAELPNQST PEQMDAIFRR FESTLGQYGE IDKFITQINN GQEGNMVVYF KQSHDTEIFP YQLKNRGILL STEMSGIDWN IYGVGQGFSQ SLNEDESSTF NVELFGYNYR QLEQQATLLK QMLESHPRIQ EVNINRSPNL FQRKRLYEFV LQTDPQLLAL RGIGASQLYE RLADLNARPQ PDQYAFINGD YEPVKLIPVQ SRSVDVWQLQ NQPLTVGSGS AHLRDIGTIT RQKVTPEIHK EDQQYKRLVS FEYFGSYNFG ETFLTKTLDE LRLQMPLGYT AKAVDRFWFG TDQRTPYELI GLVVLIIYII CAIIFESLWQ PLALIGLIPL SYIGVFLAFY WTDSNFDQGG YASFILLAGN VVCAGIFIVA ETNRLGKRYP NLSSFTVYQK AVRHKIGPVL LTVLSTVVGM VPFLLYEQEA FWYALGIGTI GGLLMSLVAV GIYLPVFLLP QNQV
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