| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_4394 |
|---|
| Symbol | |
|---|
| ID | 8728154 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 5328484 |
|---|
| End bp | 5330211 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | carboxyl-terminal protease |
|---|
| Protein accession | YP_003389174 |
|---|
| Protein GI | 284039244 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGGAG ATGGTAACGC TATGAAAACG CCGGGCATGC CTGATGGTCA GGACAATAAG
AACCGGATTC AGAATGATAA AGCAACCGTG CGTATACCCA TGCTGCTGGG CATTGCACTC
GCAGGGGGCA TGTTAATTGG GGCGACGTTC TTTGGTGGCA CCCAGAGCAT GAATAATATC
GGACGGGGAT ACAGCAAATA CAAGGAGATT CTGCAACTCA TCGAGAACAA CTATGTCGAT
ACTGTCAATA CCGACGATCT GGTCGATTAC TCGATTACCA AAATGCTGGA GAAGCTCGAT
CCGCATACGG CCTACATGAA CCCGCAGGAT GCCGTGGCCG CCCGGTCGCA GCTGGAAGGT
GGATTTGACG GCATTGGCGT TGAGTTCAAC ATTTACAAAG ACACCGTTTA TGTAGTAACG
CCCCTGGCCG GTGGCCCCTC CGAAACGGCG GGTATCCAAA GTGGCGACAA GATCATTAAG
GTCGATGATA AACCCCTGGC CGGTGGCAAA ATAGAAAACA GCGCCGTGTT TAAAGCCCTG
CGCGGCAAAC GCGATACGAA TGTTAAATTG ACTATTCTGC GAAAAGGCGA CAAGCAACCC
AAGGAGTTTA CGATTACACG GGGCCGTATT CCGACGTACT CGGTCGATGC TGCCTATATG
ATTGATGCCA AAACCGGTTA CATCAAAATA AACCGGTTCT CGGAAACAAC GTATGACGAG
TTCAAGACGG CGCTGGCGTC GCTCAAGGCA AAAGGGATGT CGCAGTTGAT GATGGATCTG
CGGAATAACC CCGGTGGATA CATGGACCGG GCTACCAACA TTGCCGACGA ATTTATTTCG
GGCAACAAAC TGCTCGTCTA TACCGATGGC AAAGACAACC GGTACGACCG TAAAACGATG
GCCCATATTG CAGGGCAGTT TGAAGAAGGT GCCCTGGTTG TGCTTATCGA CGAAGGCAGT
GCATCGGCTT CTGAAATTGT GTCGGGTGCA TTGCAGGATC ACGACCGTGC CTTGATTGCT
GGTCGGCGGT CGTTCGGGAA GGGGCTGGTA CAAATGCCGG TAACCCTGTC TGACGGTTCC
GAACTGCGTC TGACCATTTC GCGCTATTAT ACACCCAGCG GCCGTAGTAT TCAGAAACCG
TACGTGCCGG GTCAGGAGGG CGATTATGAA AAAGACCTCG AACTGCGCTC AAAGCGGGGT
GAGTATTACA TTGCCGATTC GATCAAAAAC GACCCCAAAC TGAAGTTTAA AACCGACGGC
GGACGGGTTG TATACGGCGG TGGCGGTATC ACGCCGGACT ACTTCATTCC CCGGGATTCA
ACCTGGCAGA CGGCGTATCT GGTGCAACTT TACGGCAAGA GTATTATCCG CGAGTTTGCA
ATGGAATATG CCAATGACAA CCGAAAGAAA CTGGAAAAAA TGTCGTTTGA AGAGTTCGAT
AAGGCGGTTA CTATCAACGA TGAGCAGATG AACCGTTTGG TGAAAGACGC TACGGCGGAG
GGCATCAAGT TCAACGAGAA AGAGTACAAC CGCTCTAAGA ACTACATCCG TACGCAGATA
AAAGCGCTGG TAGCCCGGTC TATTTTCCAG AAGAACAACA AGGGGGGGCA AAACAATGAA
TTCTTCCGAA TCATTGCCCA GACGGACGAC ACTTATCAGA AGGCACTGAA ACTCTTTGAT
CGGGCCAACA AGCTCGAACA TGGAGCGATG ACGTATAATC AGAAGTGA
|
|---|
| Protein sequence | MDGDGNAMKT PGMPDGQDNK NRIQNDKATV RIPMLLGIAL AGGMLIGATF FGGTQSMNNI
GRGYSKYKEI LQLIENNYVD TVNTDDLVDY SITKMLEKLD PHTAYMNPQD AVAARSQLEG
GFDGIGVEFN IYKDTVYVVT PLAGGPSETA GIQSGDKIIK VDDKPLAGGK IENSAVFKAL
RGKRDTNVKL TILRKGDKQP KEFTITRGRI PTYSVDAAYM IDAKTGYIKI NRFSETTYDE
FKTALASLKA KGMSQLMMDL RNNPGGYMDR ATNIADEFIS GNKLLVYTDG KDNRYDRKTM
AHIAGQFEEG ALVVLIDEGS ASASEIVSGA LQDHDRALIA GRRSFGKGLV QMPVTLSDGS
ELRLTISRYY TPSGRSIQKP YVPGQEGDYE KDLELRSKRG EYYIADSIKN DPKLKFKTDG
GRVVYGGGGI TPDYFIPRDS TWQTAYLVQL YGKSIIREFA MEYANDNRKK LEKMSFEEFD
KAVTINDEQM NRLVKDATAE GIKFNEKEYN RSKNYIRTQI KALVARSIFQ KNNKGGQNNE
FFRIIAQTDD TYQKALKLFD RANKLEHGAM TYNQK
|
|---|
| |