Gene Slin_4322 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_4322 
Symbol 
ID8728082 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp5238238 
End bp5241147 
Gene Length2910 bp 
Protein Length969 aa 
Translation table11 
GC content55% 
IMG OID 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003389103 
Protein GI284039173 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.39845 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTGAAC TCACCCGCAA CTACGACTGG TCGAAGACCT CCCTGGGAAC ACCCGATCAG 
TGGCCCAAAA GCCTGCATAC CCTGGTCAAT ATGATGCTCA ACTCCCGCTT TCCCATGCTC
ATCTTCTGGG GGCCGGATCT GATTACGTTT TATAACGATG CGTTCCGGCC AAGTCTGGGG
TCTTCCGGGA AGCATCCCTC CTCCCTGGGG CAAAAAGGGG AGCAAAGCTG GGCTGAGTCC
TGGCCGGTTA TCGGCCCTAT GATTTACAGC ATTATGGCAG GCGGAGAAGC CGTCTGGTTT
GAAGATCAGA AACTGCCGCT TTACCGGGAC GGCCGCCTGG ATTATGCCTA CTGGACGTAT
AGTTTTAGCC CGCTTATTGA TGATACCGGT GCTGTCAACG GTGTACTGGT CACCTGTTCC
GAAACGACCA GAACCGTTTT GGCCCGCCAA CAGGCCGAAG AAACCCAGCA ACTGGTGCTC
GCTTTTTTTG AGCAATCGCC GGTCGGCATC GCCATGCTCA GCGCACGGGA TCTGACCTTT
CTGATGGCCA ATCCGTTTTA TGGATACCTG GTAGGCCGTA CGCCCGATCA GCTCGTTGGC
AAACCCTTAC TGGTGGCCAT GCCCGAGCTG GCTGGGCAAG GATTTGACGA CCTTCTGAAA
CAGGTCGTCA CGACCGGTAT GCCTTATGTT GCCAGGGAGG TAGCTGTTGA TATCGTTCGA
AACAACCAGT TGGAAACCAT TTACGTAGAC CTGACCTACC AACCCCACCG GGAAGCCAAC
AAAACGATTT CGGCTATTCT GGTAGTTGCT ACGGATGTAA CCCAGCAGGT GTTGAGTCGG
CAAAAGATCA AAGAAAGTGA GAACCGCTTC CGAACCCTCA TCGAGGAGGC TCCCGTGGCG
ACCTGCCTGT TTGTGGGGCG CGAGATGCGC GTTGCGGTGG CCAATGAACT GATGCTTTCC
TTTTGGGGGA AAGATAAATC GGTGCTGGGC AAACCCCTGG CAGAAGCTGT GCCCGAGCTA
AACGGGCAAC CCTTTCTGAC TATCCTCGAT GAGGTCTTTA CCACGGGGCA GACCTATACA
GCCAAAAACG CCCCAGCCGA ACTGCTGGTA GATGGCGTAC TGGGGACCTA CTATTTCGAC
TTCACCTACA AACCCCTCCG GGACGCTGCC GGTGTCGTTT ATGCCATCAT GGATATGGCC
GTGGACGTAA CCCAGCAGGT AATCGCTCAG CAGCAACTGG TGGCCAGCGA AGCCCGGCTA
CGCTCGGTCA TTGCCACAGC ACCCGCTGGC ATGGGTTTAT TCGTAGGCCG GGACCTGATC
GTGGAACTAC CCAATCAGAC CTTCATCGAC ATCGTCGGCA AAGGGCCCGA CATTGCCGGC
AAGCCCCTGC GGGAGGTAAT GCCCGAACTG CTCACCGAAA ATCAGCCGTT TCTGAAAATT
CTGGATGATG TATACACCAC GGGGCAGATG TTCCAGAGCT ACGGATCGCG GGTGGATATT
GTACAGCATG GGGTGATGAC CCATAACTAC TATAATATCA CCTACACTCC TCTACGGGAT
GAGCAGGGGC AGGTATTTGC TATTTTAGAC ATCGCCATTG ACGTCACCGA AGAAATTAAA
GGCCGTCAGA AATTACAGCA GGCCGAAGAA GCCTTACGGG GCGCCATGGA ACTGGCCGAC
ATTGGAACCT GGGAACTAGA CGTACCCACT GGTCTGATTA CGTACTCCGA AAACCTTAAA
CAGCTCTTTG AATTTACCGA AGATAGTCTG CCCGCAGTCC TGATGAATGA GGTCATCCAT
GAATCCGATC AGGATCGGAT TCGGCTTGCC CTGGAGCAGG TTTTCACATT CGGGTCAGGA
GGCTTACTGG ACCAGGAATA CACCATCGTG ACCAGGCGAA CGGGTCGACA CCGGATTGTC
CGGGTGCAGG CACGCATGTA TTTTGATGAC TACCAGCAAC CGGCCAAGCT GGTGGGTACC
ATGCGGGATA TTACTGAAGA ACGGCAGCAG CAGCTTGCCC TGGAGCAGCT GGTTCAGCAG
CGAACGGAAG AGCTGGCAGC CGCCATCGAA GCACTGGAGT CGACAAACCA GATACTGGCG
TCGAAGAATG AGGAGTATGT TGTGATCAAT GAAGAGCTGG AAGAAGCCAA CCGGCAGCTG
AATCGGTCCA ACGACAATCT CCAGCAGTTT GCGTACGTAG CTTCGCACGA TTTGCAGGAG
CCGCTGCGAA AAATTCAGTC GTTTGGCAAC CTGCTGCAAA ACCAATACGC CGATCAGCTT
GGAGAAGGAG GTGCTTATCT GGAACGGATG CAATCCGCAG CCAGCCGTAT GTCCACCCTG
ATCCGGGATT TGCTGAGCTA TTCGAGGATT TCGGTCCAAC AGGACCGGCG GCAGTTGGTT
TCCCTTCCCA CCGTTGTCCA GACCGTGCTC ACCGACCTGG AGCTGGTAAT TGCGGAAACG
GGCGCCGAGG TTACCGTCGG GGAACTGCCG GAGGTGTTGG GCGATCCATT ACAGTTGGGC
CAGCTCTTCC AAAACCTGCT GACAAACGCC CTCAAGTTTA GCCGCATAGC ACGGCCCGGC
GCGACCAACG AATCCAAACC GCCAGTGCCC GTAATTCGCG TTGATGCGCG AACGCTGCTG
GCCCGAGACG TCCCCGCTTT GGTAGTATCC AACCGTTCGG CTCCTGTCTA TCACCAGATT
GACGTAATCG ACAACGGCAT TGGCTTCGAG CAAAAGTATG CCGACCGAAT TTTTCAGGTC
TTTCAGCGGC TGCACGGCAG GAACGAGTAT GCCGGAACGG GCATTGGCCT GGCCATCTGC
GAAAAAGTAG TGACCAATCA TGGGGGTGCC ATCCGGGCCA GCAGTCAACC CGGTCGGGGA
GCAACCTTTA GCGTATACCT GCCCGGCTGA
 
Protein sequence
MGELTRNYDW SKTSLGTPDQ WPKSLHTLVN MMLNSRFPML IFWGPDLITF YNDAFRPSLG 
SSGKHPSSLG QKGEQSWAES WPVIGPMIYS IMAGGEAVWF EDQKLPLYRD GRLDYAYWTY
SFSPLIDDTG AVNGVLVTCS ETTRTVLARQ QAEETQQLVL AFFEQSPVGI AMLSARDLTF
LMANPFYGYL VGRTPDQLVG KPLLVAMPEL AGQGFDDLLK QVVTTGMPYV AREVAVDIVR
NNQLETIYVD LTYQPHREAN KTISAILVVA TDVTQQVLSR QKIKESENRF RTLIEEAPVA
TCLFVGREMR VAVANELMLS FWGKDKSVLG KPLAEAVPEL NGQPFLTILD EVFTTGQTYT
AKNAPAELLV DGVLGTYYFD FTYKPLRDAA GVVYAIMDMA VDVTQQVIAQ QQLVASEARL
RSVIATAPAG MGLFVGRDLI VELPNQTFID IVGKGPDIAG KPLREVMPEL LTENQPFLKI
LDDVYTTGQM FQSYGSRVDI VQHGVMTHNY YNITYTPLRD EQGQVFAILD IAIDVTEEIK
GRQKLQQAEE ALRGAMELAD IGTWELDVPT GLITYSENLK QLFEFTEDSL PAVLMNEVIH
ESDQDRIRLA LEQVFTFGSG GLLDQEYTIV TRRTGRHRIV RVQARMYFDD YQQPAKLVGT
MRDITEERQQ QLALEQLVQQ RTEELAAAIE ALESTNQILA SKNEEYVVIN EELEEANRQL
NRSNDNLQQF AYVASHDLQE PLRKIQSFGN LLQNQYADQL GEGGAYLERM QSAASRMSTL
IRDLLSYSRI SVQQDRRQLV SLPTVVQTVL TDLELVIAET GAEVTVGELP EVLGDPLQLG
QLFQNLLTNA LKFSRIARPG ATNESKPPVP VIRVDARTLL ARDVPALVVS NRSAPVYHQI
DVIDNGIGFE QKYADRIFQV FQRLHGRNEY AGTGIGLAIC EKVVTNHGGA IRASSQPGRG
ATFSVYLPG