Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_4322 |
Symbol | |
ID | 8728082 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | + |
Start bp | 5238238 |
End bp | 5241147 |
Gene Length | 2910 bp |
Protein Length | 969 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | |
Product | PAS/PAC sensor signal transduction histidine kinase |
Protein accession | YP_003389103 |
Protein GI | 284039173 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.39845 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGTGAAC TCACCCGCAA CTACGACTGG TCGAAGACCT CCCTGGGAAC ACCCGATCAG TGGCCCAAAA GCCTGCATAC CCTGGTCAAT ATGATGCTCA ACTCCCGCTT TCCCATGCTC ATCTTCTGGG GGCCGGATCT GATTACGTTT TATAACGATG CGTTCCGGCC AAGTCTGGGG TCTTCCGGGA AGCATCCCTC CTCCCTGGGG CAAAAAGGGG AGCAAAGCTG GGCTGAGTCC TGGCCGGTTA TCGGCCCTAT GATTTACAGC ATTATGGCAG GCGGAGAAGC CGTCTGGTTT GAAGATCAGA AACTGCCGCT TTACCGGGAC GGCCGCCTGG ATTATGCCTA CTGGACGTAT AGTTTTAGCC CGCTTATTGA TGATACCGGT GCTGTCAACG GTGTACTGGT CACCTGTTCC GAAACGACCA GAACCGTTTT GGCCCGCCAA CAGGCCGAAG AAACCCAGCA ACTGGTGCTC GCTTTTTTTG AGCAATCGCC GGTCGGCATC GCCATGCTCA GCGCACGGGA TCTGACCTTT CTGATGGCCA ATCCGTTTTA TGGATACCTG GTAGGCCGTA CGCCCGATCA GCTCGTTGGC AAACCCTTAC TGGTGGCCAT GCCCGAGCTG GCTGGGCAAG GATTTGACGA CCTTCTGAAA CAGGTCGTCA CGACCGGTAT GCCTTATGTT GCCAGGGAGG TAGCTGTTGA TATCGTTCGA AACAACCAGT TGGAAACCAT TTACGTAGAC CTGACCTACC AACCCCACCG GGAAGCCAAC AAAACGATTT CGGCTATTCT GGTAGTTGCT ACGGATGTAA CCCAGCAGGT GTTGAGTCGG CAAAAGATCA AAGAAAGTGA GAACCGCTTC CGAACCCTCA TCGAGGAGGC TCCCGTGGCG ACCTGCCTGT TTGTGGGGCG CGAGATGCGC GTTGCGGTGG CCAATGAACT GATGCTTTCC TTTTGGGGGA AAGATAAATC GGTGCTGGGC AAACCCCTGG CAGAAGCTGT GCCCGAGCTA AACGGGCAAC CCTTTCTGAC TATCCTCGAT GAGGTCTTTA CCACGGGGCA GACCTATACA GCCAAAAACG CCCCAGCCGA ACTGCTGGTA GATGGCGTAC TGGGGACCTA CTATTTCGAC TTCACCTACA AACCCCTCCG GGACGCTGCC GGTGTCGTTT ATGCCATCAT GGATATGGCC GTGGACGTAA CCCAGCAGGT AATCGCTCAG CAGCAACTGG TGGCCAGCGA AGCCCGGCTA CGCTCGGTCA TTGCCACAGC ACCCGCTGGC ATGGGTTTAT TCGTAGGCCG GGACCTGATC GTGGAACTAC CCAATCAGAC CTTCATCGAC ATCGTCGGCA AAGGGCCCGA CATTGCCGGC AAGCCCCTGC GGGAGGTAAT GCCCGAACTG CTCACCGAAA ATCAGCCGTT TCTGAAAATT CTGGATGATG TATACACCAC GGGGCAGATG TTCCAGAGCT ACGGATCGCG GGTGGATATT GTACAGCATG GGGTGATGAC CCATAACTAC TATAATATCA CCTACACTCC TCTACGGGAT GAGCAGGGGC AGGTATTTGC TATTTTAGAC ATCGCCATTG ACGTCACCGA AGAAATTAAA GGCCGTCAGA AATTACAGCA GGCCGAAGAA GCCTTACGGG GCGCCATGGA ACTGGCCGAC ATTGGAACCT GGGAACTAGA CGTACCCACT GGTCTGATTA CGTACTCCGA AAACCTTAAA CAGCTCTTTG AATTTACCGA AGATAGTCTG CCCGCAGTCC TGATGAATGA GGTCATCCAT GAATCCGATC AGGATCGGAT TCGGCTTGCC CTGGAGCAGG TTTTCACATT CGGGTCAGGA GGCTTACTGG ACCAGGAATA CACCATCGTG ACCAGGCGAA CGGGTCGACA CCGGATTGTC CGGGTGCAGG CACGCATGTA TTTTGATGAC TACCAGCAAC CGGCCAAGCT GGTGGGTACC ATGCGGGATA TTACTGAAGA ACGGCAGCAG CAGCTTGCCC TGGAGCAGCT GGTTCAGCAG CGAACGGAAG AGCTGGCAGC CGCCATCGAA GCACTGGAGT CGACAAACCA GATACTGGCG TCGAAGAATG AGGAGTATGT TGTGATCAAT GAAGAGCTGG AAGAAGCCAA CCGGCAGCTG AATCGGTCCA ACGACAATCT CCAGCAGTTT GCGTACGTAG CTTCGCACGA TTTGCAGGAG CCGCTGCGAA AAATTCAGTC GTTTGGCAAC CTGCTGCAAA ACCAATACGC CGATCAGCTT GGAGAAGGAG GTGCTTATCT GGAACGGATG CAATCCGCAG CCAGCCGTAT GTCCACCCTG ATCCGGGATT TGCTGAGCTA TTCGAGGATT TCGGTCCAAC AGGACCGGCG GCAGTTGGTT TCCCTTCCCA CCGTTGTCCA GACCGTGCTC ACCGACCTGG AGCTGGTAAT TGCGGAAACG GGCGCCGAGG TTACCGTCGG GGAACTGCCG GAGGTGTTGG GCGATCCATT ACAGTTGGGC CAGCTCTTCC AAAACCTGCT GACAAACGCC CTCAAGTTTA GCCGCATAGC ACGGCCCGGC GCGACCAACG AATCCAAACC GCCAGTGCCC GTAATTCGCG TTGATGCGCG AACGCTGCTG GCCCGAGACG TCCCCGCTTT GGTAGTATCC AACCGTTCGG CTCCTGTCTA TCACCAGATT GACGTAATCG ACAACGGCAT TGGCTTCGAG CAAAAGTATG CCGACCGAAT TTTTCAGGTC TTTCAGCGGC TGCACGGCAG GAACGAGTAT GCCGGAACGG GCATTGGCCT GGCCATCTGC GAAAAAGTAG TGACCAATCA TGGGGGTGCC ATCCGGGCCA GCAGTCAACC CGGTCGGGGA GCAACCTTTA GCGTATACCT GCCCGGCTGA
|
Protein sequence | MGELTRNYDW SKTSLGTPDQ WPKSLHTLVN MMLNSRFPML IFWGPDLITF YNDAFRPSLG SSGKHPSSLG QKGEQSWAES WPVIGPMIYS IMAGGEAVWF EDQKLPLYRD GRLDYAYWTY SFSPLIDDTG AVNGVLVTCS ETTRTVLARQ QAEETQQLVL AFFEQSPVGI AMLSARDLTF LMANPFYGYL VGRTPDQLVG KPLLVAMPEL AGQGFDDLLK QVVTTGMPYV AREVAVDIVR NNQLETIYVD LTYQPHREAN KTISAILVVA TDVTQQVLSR QKIKESENRF RTLIEEAPVA TCLFVGREMR VAVANELMLS FWGKDKSVLG KPLAEAVPEL NGQPFLTILD EVFTTGQTYT AKNAPAELLV DGVLGTYYFD FTYKPLRDAA GVVYAIMDMA VDVTQQVIAQ QQLVASEARL RSVIATAPAG MGLFVGRDLI VELPNQTFID IVGKGPDIAG KPLREVMPEL LTENQPFLKI LDDVYTTGQM FQSYGSRVDI VQHGVMTHNY YNITYTPLRD EQGQVFAILD IAIDVTEEIK GRQKLQQAEE ALRGAMELAD IGTWELDVPT GLITYSENLK QLFEFTEDSL PAVLMNEVIH ESDQDRIRLA LEQVFTFGSG GLLDQEYTIV TRRTGRHRIV RVQARMYFDD YQQPAKLVGT MRDITEERQQ QLALEQLVQQ RTEELAAAIE ALESTNQILA SKNEEYVVIN EELEEANRQL NRSNDNLQQF AYVASHDLQE PLRKIQSFGN LLQNQYADQL GEGGAYLERM QSAASRMSTL IRDLLSYSRI SVQQDRRQLV SLPTVVQTVL TDLELVIAET GAEVTVGELP EVLGDPLQLG QLFQNLLTNA LKFSRIARPG ATNESKPPVP VIRVDARTLL ARDVPALVVS NRSAPVYHQI DVIDNGIGFE QKYADRIFQV FQRLHGRNEY AGTGIGLAIC EKVVTNHGGA IRASSQPGRG ATFSVYLPG
|
| |