| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_4293 |
|---|
| Symbol | |
|---|
| ID | 8728053 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 5190717 |
|---|
| End bp | 5191709 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003389074 |
|---|
| Protein GI | 284039144 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000126471 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0023033 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAGCC AGCGCTTTAC AGCTGGGGGC GTGTATAAGT TACCAGCGCT GTTGGTCTAC
CAGCTCATGA ATGCCATGAA GCGGCAGGCC AAGCTGGATG TGGCCAAGTA TGCCACCTAC
GGAGTGTTTG CCGCTTTGGG CGTTGGGGAG ATCATGGCGG CAGAGACGGG CTTAGAGACC
ACGCTTGCCT TACTGGACAT GGGTGTGTTG GGCAGTGACA TCGTTATCAA CGAGGCATTG
GCCAACAAGC TCAACCAGAC GGCCGATGGC AAAGCGTTTC TAGATGCCTA CAACAAGTTT
GCTCTGATTT ATGGGGGAGT CAGGGTGTCT GATGCTCTGT TAGGGTTGAG CAAGCAACTT
CGTCGGTCGG CTAGTGTGCT CAATGACCCA GAGGTGAATA ACCTTGCCAC GGAGTTGAGT
GCTGAAGCTA TCGAGGCAGG CGGCTTGTTG GAAAATGCAT TTTTGCCGGG GTGGACGAAA
GAGAGGATAT TAGCTATTCC TAAACCGGAC CGACCAAATG TGGATGTCTA CATGAACCCT
ATCCATAAGG CGACCCAATT AAGGAAGTTC AATACGGAAG GCGGTGCTTT TGTTATTCGT
AAAAGCGATG TAATTAGAAA TCAGAACTAT AAAACAATTG TTGACCGAAA GTTCGTTGGC
CTAAAAAGCG AAATGGATAA TGTCATAATT AAGTATAACA ATGCAGGAAA GGATACTAAG
GTCTTAGTCG AAGAATTAGA TTTAGGAGAC GACTATTTCC AGCCCAACGA TGAAGTTTTT
TATGTAACAG TAAAACCAAA TCAAGGTTTC TACTTTGATT TACCTAATGG AAATGAGCGA
GGAGCATATG AAGAGCTTTG GATACCAGGT GGATTCACCG GGCATGGCAC AGCTGAAGCT
GTTCTTTCTA ATTCAGGAAG TTATGTGCAC AATAATGATT GGCAGATGTT TGTCAATTTC
TTTGGTTCAG AAAACGTGAT CAAAATAAGA TAA
|
|---|
| Protein sequence | MGSQRFTAGG VYKLPALLVY QLMNAMKRQA KLDVAKYATY GVFAALGVGE IMAAETGLET
TLALLDMGVL GSDIVINEAL ANKLNQTADG KAFLDAYNKF ALIYGGVRVS DALLGLSKQL
RRSASVLNDP EVNNLATELS AEAIEAGGLL ENAFLPGWTK ERILAIPKPD RPNVDVYMNP
IHKATQLRKF NTEGGAFVIR KSDVIRNQNY KTIVDRKFVG LKSEMDNVII KYNNAGKDTK
VLVEELDLGD DYFQPNDEVF YVTVKPNQGF YFDLPNGNER GAYEELWIPG GFTGHGTAEA
VLSNSGSYVH NNDWQMFVNF FGSENVIKIR
|
|---|
| |