| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_4254 |
|---|
| Symbol | |
|---|
| ID | 8728013 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 5134332 |
|---|
| End bp | 5136194 |
|---|
| Gene Length | 1863 bp |
|---|
| Protein Length | 620 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | Carbamoyltransferase |
|---|
| Protein accession | YP_003389037 |
|---|
| Protein GI | 284039107 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0843761 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATAT TAGGCATCTC TGCTTTTTAT CACGACTCGG CAGCAGCATT AATTGAAGAC
GGAAAAATTA TTGCCGCTGC TCAGGAAGAA CGATTTACCC GAAAAAAGCA CGATCCAGGG
TTTCCGGCTG AAGCAATAAA ATATTGTCTT CAGTACAGTG GAACAGACCT CAATAAACTC
GACGCTATTG TATTCTACGA TAAACCGCTA CTCAAGTTTG AGCGGTTACT GGAAACGTAT
TATGCCTTTG CGCCCCAGGG GCTTCGGTCG TTCTTAATGT CGATTCCAGT GTGGCTCAAA
GAAAAGCTGT TTTTGAAACG GCTTATTCGG GAGGAACTGG AAAAACTAGG CTACAAGTCG
GCCAGTAAGG TTAAACTGCT TTTTCCTGAA CACCATCTTT CGCACGGAGC CAGTGCGTTT
TACCCCTCCC CGTTCGAACG GGCTGCTATT CTGACCATTG ATGGCGTGGG CGAATGGGCC
ACCGCTTCGA TTGGCCTGGG TGAAGGGAAG AATATTTCTA TTCTGAAAGA AATGCGATTT
CCGCACTCGC TCGGCTTACT GTATTCGGCT TTTACCTATT TTCTGGGTTT TCGGGTCAAT
TCGGGGGAGT ATAAATTAAT GGGGCTTGCT CCCTATGGCG ACCCCAACTC GCCCGATGTT
GCCCGCTACA TGGCCACCAT CAAAGAAACG CTGGCCGACC TTCGGCCTGA TGGGTCGATC
TGGCTCAACC AGGATTATTT CGACTATGCC ACGGGCCTGA AGATGGTGAA CGAAGGCAAA
TGGGCTGAAT TATTCGGGTT TCCCAAGCGC CAGCCGGAAG ATGAACTGCT GCCTCAACAT
TGTAATCTGG GCCTGGCTAT CCAGTACCTG ACCGAAGAAG TGGTTCTGAA CATGGCCAAA
GAAGCCAAAC GGCTTACCAA TGCCGATGCG CTGGTATTGG CGGGTGGTGT GGCCCTGAAC
TGCGTATCGA ACGGAAAGCT TCAGGCAGCG GGTCTTTTCA AGGACATATT CATTCAGCCA
GCCGCTGGTG ATGCCGGTGG TGCCCTAGGT GCAGCCCTGG CCGCTTACCA CATTTACTTC
GGCAAAGAGC GGGTCGTAAC GACCGAGCGC GATGCCATGC GGGGTTCTTA TCTGGGGCCA
ACCTTTTCGG ATCTGGATGT GGAGCTGATG GCAAAGAAAT ACAAAGCCGT AGCTACTCAT
TACACCGATT TTACCGAACT GAGCCGCGAT GCCGCCAAAC TTCTGGCCGA AGGCAACGTA
CTGGGCTGGG TGCAGGGACA GATGGAGTTC GGTCCGCGTG CATTGGGTGG CCGCAGCATT
CTGGGTGACC CCCGCAATGC CGAAATGCAG AAAAAGCTGA ACCTGAAAAT CAAATACCGC
GAATCGTTCC GGCCGTTTGC GCCGTCGGTA CTGGCCGAAG ATTGTGCCGA ATATTTCGAT
TATGACGGTA TTTCGCCCTA TATGCTGCTC GTTCATCCGG TAGCGCAAAA ACGGCGCACA
CCCGTCCCGG CCGATTACGC CAGCTTTCCA CTCCGCGAGA AGCTGTATTA CCAGCGCTCC
GATCTACCTT CTATTACGCA CATCGACTAC TCGGCCCGGA TTCAGACAGT TCATAAAGAT
ACCAACCCGC GCTATTACCA GTTAATAAAT GCCTTTAAAC AGCTGACCGG TTATGGTGTT
ATCGTTAATA CCAGCTTCAA CGTGCGGGGT GAGCCTATTG TATGTACCCC GGATGATGCG
TACCGGTGTT TCATGCGTAC CGAAATGGAC TATCTGGCCG TTGGCAATTA CCTGTTCGAC
AAACGGCAGC AGCCTGAGTG GCAGGAGAAG GATAACTGGA AGGAAGAATT TGTTCTAGAT
TAA
|
|---|
| Protein sequence | MTILGISAFY HDSAAALIED GKIIAAAQEE RFTRKKHDPG FPAEAIKYCL QYSGTDLNKL
DAIVFYDKPL LKFERLLETY YAFAPQGLRS FLMSIPVWLK EKLFLKRLIR EELEKLGYKS
ASKVKLLFPE HHLSHGASAF YPSPFERAAI LTIDGVGEWA TASIGLGEGK NISILKEMRF
PHSLGLLYSA FTYFLGFRVN SGEYKLMGLA PYGDPNSPDV ARYMATIKET LADLRPDGSI
WLNQDYFDYA TGLKMVNEGK WAELFGFPKR QPEDELLPQH CNLGLAIQYL TEEVVLNMAK
EAKRLTNADA LVLAGGVALN CVSNGKLQAA GLFKDIFIQP AAGDAGGALG AALAAYHIYF
GKERVVTTER DAMRGSYLGP TFSDLDVELM AKKYKAVATH YTDFTELSRD AAKLLAEGNV
LGWVQGQMEF GPRALGGRSI LGDPRNAEMQ KKLNLKIKYR ESFRPFAPSV LAEDCAEYFD
YDGISPYMLL VHPVAQKRRT PVPADYASFP LREKLYYQRS DLPSITHIDY SARIQTVHKD
TNPRYYQLIN AFKQLTGYGV IVNTSFNVRG EPIVCTPDDA YRCFMRTEMD YLAVGNYLFD
KRQQPEWQEK DNWKEEFVLD
|
|---|
| |